Experiment: 2B-T2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01350 and LRK54_RS01355 are separated by 77 nucleotides LRK54_RS01355 and LRK54_RS01360 are separated by 98 nucleotides
LRK54_RS01350: LRK54_RS01350 - SPOR domain-containing protein, at 293,036 to 294,094
_RS01350
LRK54_RS01355: LRK54_RS01355 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 294,172 to 295,446
_RS01355
LRK54_RS01360: LRK54_RS01360 - heavy metal translocating P-type ATPase, at 295,545 to 298,145
_RS01360
Position (kb) 294
295
296 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 293.332 kb on + strand, within LRK54_RS01350 at 293.333 kb on - strand, within LRK54_RS01350 at 293.333 kb on - strand, within LRK54_RS01350 at 293.535 kb on + strand, within LRK54_RS01350 at 293.535 kb on + strand, within LRK54_RS01350 at 293.535 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.556 kb on + strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.557 kb on - strand, within LRK54_RS01350 at 293.602 kb on + strand, within LRK54_RS01350 at 293.602 kb on + strand, within LRK54_RS01350 at 293.603 kb on - strand, within LRK54_RS01350 at 293.603 kb on - strand, within LRK54_RS01350 at 293.603 kb on - strand, within LRK54_RS01350 at 294.139 kb on - strand at 294.139 kb on - strand at 294.139 kb on - strand at 294.139 kb on - strand at 294.139 kb on - strand at 294.139 kb on - strand at 294.139 kb on - strand at 294.139 kb on - strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.140 kb on + strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 294.141 kb on - strand at 295.481 kb on + strand at 295.481 kb on + strand at 295.481 kb on + strand at 295.481 kb on + strand at 295.481 kb on + strand at 295.481 kb on + strand at 295.481 kb on + strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.482 kb on - strand at 295.654 kb on + strand at 295.654 kb on + strand at 295.655 kb on - strand at 295.655 kb on - strand at 295.678 kb on - strand at 295.693 kb on + strand at 295.693 kb on + strand at 295.693 kb on + strand at 295.693 kb on + strand at 295.693 kb on + strand at 295.693 kb on + strand at 295.693 kb on + strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.694 kb on - strand at 295.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2B-T2 remove 293,332 + LRK54_RS01350 0.28 +0.5 293,333 - LRK54_RS01350 0.28 +1.1 293,333 - LRK54_RS01350 0.28 +1.1 293,535 + LRK54_RS01350 0.47 +1.1 293,535 + LRK54_RS01350 0.47 +0.7 293,535 + LRK54_RS01350 0.47 -0.9 293,556 + LRK54_RS01350 0.49 +1.5 293,556 + LRK54_RS01350 0.49 -0.5 293,556 + LRK54_RS01350 0.49 -0.1 293,556 + LRK54_RS01350 0.49 +1.4 293,556 + LRK54_RS01350 0.49 +0.1 293,556 + LRK54_RS01350 0.49 -0.3 293,556 + LRK54_RS01350 0.49 +0.1 293,556 + LRK54_RS01350 0.49 +1.1 293,556 + LRK54_RS01350 0.49 -0.5 293,556 + LRK54_RS01350 0.49 +0.1 293,556 + LRK54_RS01350 0.49 -0.9 293,556 + LRK54_RS01350 0.49 +1.4 293,556 + LRK54_RS01350 0.49 +2.7 293,556 + LRK54_RS01350 0.49 -0.5 293,556 + LRK54_RS01350 0.49 +0.1 293,556 + LRK54_RS01350 0.49 +1.1 293,557 - LRK54_RS01350 0.49 -0.5 293,557 - LRK54_RS01350 0.49 +0.1 293,557 - LRK54_RS01350 0.49 +1.1 293,557 - LRK54_RS01350 0.49 -1.5 293,557 - LRK54_RS01350 0.49 +0.5 293,557 - LRK54_RS01350 0.49 -0.5 293,557 - LRK54_RS01350 0.49 -1.2 293,557 - LRK54_RS01350 0.49 +1.7 293,557 - LRK54_RS01350 0.49 +0.1 293,557 - LRK54_RS01350 0.49 -0.1 293,557 - LRK54_RS01350 0.49 +3.1 293,557 - LRK54_RS01350 0.49 +0.7 293,557 - LRK54_RS01350 0.49 +1.1 293,557 - LRK54_RS01350 0.49 +0.1 293,557 - LRK54_RS01350 0.49 -0.7 293,602 + LRK54_RS01350 0.53 +1.5 293,602 + LRK54_RS01350 0.53 +1.1 293,603 - LRK54_RS01350 0.54 -1.5 293,603 - LRK54_RS01350 0.54 +0.3 293,603 - LRK54_RS01350 0.54 +0.1 294,139 - +1.1 294,139 - -0.8 294,139 - +1.1 294,139 - -0.6 294,139 - -0.2 294,139 - -0.4 294,139 - -0.5 294,139 - +0.5 294,140 + -0.2 294,140 + +1.1 294,140 + -2.2 294,140 + -2.0 294,140 + -1.2 294,140 + +1.1 294,140 + -0.9 294,140 + -0.1 294,140 + +0.1 294,140 + +0.1 294,140 + +0.1 294,140 + -1.7 294,140 + +0.4 294,140 + -0.9 294,140 + -2.2 294,140 + -2.0 294,140 + -1.2 294,140 + -0.9 294,140 + -0.9 294,140 + +1.1 294,140 + +1.1 294,140 + -0.9 294,140 + +1.1 294,140 + -1.6 294,140 + -0.5 294,140 + +0.1 294,141 - -0.2 294,141 - -1.9 294,141 - -0.5 294,141 - -0.5 294,141 - +1.1 294,141 - -0.9 294,141 - -0.5 294,141 - -0.2 294,141 - +0.1 294,141 - -0.9 294,141 - -1.7 294,141 - -0.2 294,141 - -1.0 294,141 - +2.1 294,141 - -0.5 294,141 - -2.0 294,141 - -0.5 294,141 - -0.5 294,141 - +0.5 294,141 - -0.6 295,481 + -1.5 295,481 + +0.6 295,481 + -0.5 295,481 + -0.9 295,481 + -2.0 295,481 + -0.5 295,481 + -1.7 295,482 - +1.1 295,482 - +1.1 295,482 - -1.0 295,482 - -0.2 295,482 - -0.5 295,482 - -1.7 295,482 - -0.9 295,482 - -0.2 295,482 - -1.2 295,482 - -1.2 295,654 + +1.1 295,654 + -1.1 295,655 - -0.2 295,655 - +1.1 295,678 - -1.5 295,693 + -1.0 295,693 + -0.6 295,693 + -1.6 295,693 + -0.5 295,693 + +0.0 295,693 + +0.1 295,693 + -0.7 295,694 - +0.1 295,694 - +1.1 295,694 - -0.5 295,694 - +1.1 295,694 - -0.7 295,694 - -0.5 295,736 + -0.2
Or see this region's nucleotide sequence