Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05945

Experiment: 2A-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2A-T2
1,280,884	+				-0.1
1,281,115	+				-0.1
1,281,115	+				-1.3
1,281,115	+				-0.4
1,281,115	+				-0.1
1,281,115	+				-0.2
1,281,115	+				-0.1
1,281,115	+				-0.7
1,281,115	+				-0.9
1,281,115	+				-0.7
1,281,115	+				-1.4
1,281,115	+				-0.1
1,281,115	+				-0.1
1,281,115	+				-0.8
1,281,115	+				-1.4
1,281,115	+				-0.2
1,281,115	+				-0.1
1,281,116	-				-0.4
1,281,116	-				+0.5
1,281,116	-				-0.4
1,281,116	-				+0.3
1,281,191	+				+1.9
1,281,191	+				-0.7
1,281,191	+				-0.9
1,281,191	+				-2.2
1,281,192	-				-1.0
1,281,192	-				-2.4
1,281,348	+		LRK54_RS05940	0.15	-2.7
1,281,348	+		LRK54_RS05940	0.15	-2.0
1,281,349	-		LRK54_RS05940	0.16	-1.1
1,281,349	-		LRK54_RS05940	0.16	-1.7
1,281,477	+		LRK54_RS05940	0.69	-0.1
1,281,477	+		LRK54_RS05940	0.69	-0.5
1,281,477	+		LRK54_RS05940	0.69	+0.9
1,281,477	+		LRK54_RS05940	0.69	-1.1
1,281,477	+		LRK54_RS05940	0.69	-0.1
1,281,477	+		LRK54_RS05940	0.69	-1.9
1,281,478	-		LRK54_RS05940	0.70	-1.8
1,281,478	-		LRK54_RS05940	0.70	+0.2
1,281,478	-		LRK54_RS05940	0.70	+0.2
1,281,478	-		LRK54_RS05940	0.70	-2.2
1,281,478	-		LRK54_RS05940	0.70	+0.7
1,281,663	+				-0.7
1,281,663	+				-0.7
1,281,663	+				-1.1
1,281,663	+				-2.4
1,281,663	+				-0.7
1,281,663	+				-1.2
1,281,663	+				+0.1
1,281,663	+				-1.1
1,281,663	+				-1.1
1,281,663	+				-1.1
1,281,663	+				-0.1
1,281,663	+				+0.9
1,281,663	+				-0.7
1,281,663	+				+0.9
1,281,663	+				+0.9
1,281,663	+				+0.9
1,281,663	+				-1.4
1,281,663	+				-0.1
1,281,663	+				-0.1
1,281,663	+				-1.1
1,281,663	+				-0.5
1,281,663	+				-2.0
1,281,663	+				-0.9
1,281,663	+				-1.1
1,281,663	+				-1.4
1,281,664	-				-1.8
1,281,664	-				-1.5
1,281,664	-				-0.1
1,281,664	-				-1.4
1,281,664	-				-1.1
1,281,664	-				-0.1
1,281,664	-				-0.7
1,281,664	-				+1.5
1,281,664	-				-0.7
1,281,664	-				-1.1
1,281,664	-				-0.4
1,281,664	-				-1.9
1,281,664	-				-1.0
1,281,664	-				-0.9
1,281,664	-				-0.7
1,281,664	-				-0.7
1,281,664	-				-1.7
1,281,664	-				-0.1
1,281,664	-				-0.5
1,281,664	-				+1.2
1,281,664	-				-0.7
1,281,679	+				-1.4
1,281,679	+				-1.7
1,281,679	+				-0.1
1,281,679	+				-0.1
1,281,679	+				-1.6
1,281,679	+				+0.4
1,281,679	+				+0.9
1,281,679	+				-2.0
1,281,679	+				-0.7
1,281,679	+				-1.1
1,281,679	+				-0.2
1,281,679	+				-0.1
1,281,679	+				-0.1
1,281,679	+				+0.9
1,281,680	-				-2.1
1,281,680	-				-0.7
1,281,680	-				-0.9
1,281,680	-				+0.9
1,281,680	-				-1.5
1,281,680	-				-0.1
1,281,680	-				-1.5
1,281,680	-				-2.5
1,281,680	-				-0.1
1,281,680	-				+0.3
1,281,690	+				-0.1
1,281,690	+				+0.1
1,281,691	-				+0.9
1,281,691	-				-1.1
1,281,691	-				-1.1
1,281,826	+		LRK54_RS05945	0.30	-0.1
1,281,826	+		LRK54_RS05945	0.30	+0.2
1,281,826	+		LRK54_RS05945	0.30	-0.1
1,281,827	-		LRK54_RS05945	0.31	-1.3
1,281,859	+		LRK54_RS05945	0.43	-0.6
1,281,860	-		LRK54_RS05945	0.44	-1.1
1,281,860	-		LRK54_RS05945	0.44	-1.4
1,281,860	-		LRK54_RS05945	0.44	+1.3
1,281,860	-		LRK54_RS05945	0.44	+0.9
1,281,988	+				-1.4
1,281,988	+				-1.5
1,281,988	+				-1.2
1,281,988	+				-2.2
1,281,988	+				-1.4
1,281,988	+				-1.6
1,281,988	+				+0.9
1,281,988	+				-0.7
1,281,988	+				-1.1
1,281,989	-				+0.9
1,281,989	-				-1.4
1,281,989	-				-0.1
1,281,989	-				+1.9
1,281,989	-				-1.5
1,281,989	-				-0.3
1,281,995	+				-1.7
1,281,995	+				-2.7
1,281,996	-				-1.4
1,281,996	-				-0.1
1,281,996	-				-0.3
1,282,052	+				-1.1
1,282,052	+				+0.2
1,282,052	+				+0.9
1,282,052	+				-1.7
1,282,052	+				+0.7
1,282,052	+				+0.9
1,282,052	+				+0.2
1,282,052	+				-0.7
1,282,053	-				-0.1
1,282,053	-				-1.4
1,282,053	-				-1.1
1,282,053	-				-0.5
1,282,075	+				-0.7
1,282,076	-				-0.1
1,282,263	-				+0.9
1,282,267	+				+0.9
1,282,267	+				+0.9
1,282,267	+				+0.3
1,282,267	+				-1.1
1,282,267	+				-1.4
1,282,267	+				-1.1
1,282,267	+				-0.7
1,282,268	-				-0.1
1,282,268	-				-0.7
1,282,268	-				-0.3
1,282,268	-				-0.1
1,282,268	-				-2.1
1,282,268	-				+0.9
1,282,268	-				-1.1
1,282,268	-				-2.4
1,282,268	-				-0.1
1,282,389	+		LRK54_RS05955	0.15	-2.9
1,282,389	+		LRK54_RS05955	0.15	-0.7
1,282,390	-		LRK54_RS05955	0.15	-0.7
1,282,536	+		LRK54_RS05955	0.37	-0.2
1,282,536	+		LRK54_RS05955	0.37	-0.8
1,282,536	+		LRK54_RS05955	0.37	+0.9
1,282,536	+		LRK54_RS05955	0.37	-0.7
1,282,536	+		LRK54_RS05955	0.37	-0.9
1,282,536	+		LRK54_RS05955	0.37	-1.1
1,282,536	+		LRK54_RS05955	0.37	-1.4
1,282,537	-		LRK54_RS05955	0.37	-1.3
1,282,537	-		LRK54_RS05955	0.37	-0.7
1,282,537	-		LRK54_RS05955	0.37	-1.3
1,282,537	-		LRK54_RS05955	0.37	-1.4
1,282,537	-		LRK54_RS05955	0.37	-0.7
1,282,537	-		LRK54_RS05955	0.37	-1.0
1,282,537	-		LRK54_RS05955	0.37	-2.1
1,282,537	-		LRK54_RS05955	0.37	-1.1
1,282,537	-		LRK54_RS05955	0.37	+0.9
1,282,537	-		LRK54_RS05955	0.37	-2.5
1,282,537	-		LRK54_RS05955	0.37	+0.3
1,282,611	+		LRK54_RS05955	0.48	-1.8
1,282,611	+		LRK54_RS05955	0.48	-1.6
1,282,611	+		LRK54_RS05955	0.48	-1.7
1,282,611	+		LRK54_RS05955	0.48	-1.9
1,282,611	+		LRK54_RS05955	0.48	-0.9
1,282,612	-		LRK54_RS05955	0.48	+0.9
1,282,612	-		LRK54_RS05955	0.48	-0.1
1,282,612	-		LRK54_RS05955	0.48	-0.7
1,282,612	-		LRK54_RS05955	0.48	-0.1
1,282,612	-		LRK54_RS05955	0.48	-0.1
1,282,612	-		LRK54_RS05955	0.48	-1.4
1,282,612	-		LRK54_RS05955	0.48	-0.7
1,282,612	-		LRK54_RS05955	0.48	-1.1
1,282,743	+		LRK54_RS05955	0.68	+0.6
1,282,743	+		LRK54_RS05955	0.68	-2.1
1,282,744	-		LRK54_RS05955	0.68	+0.1
1,282,744	-		LRK54_RS05955	0.68	-1.1
1,282,744	-		LRK54_RS05955	0.68	-1.1
1,282,744	-		LRK54_RS05955	0.68	+0.9
1,282,744	-		LRK54_RS05955	0.68	-1.1
1,282,744	-		LRK54_RS05955	0.68	-1.7
1,282,744	-		LRK54_RS05955	0.68	-0.7
1,282,744	-		LRK54_RS05955	0.68	-0.5
1,282,744	-		LRK54_RS05955	0.68	-2.2
1,282,744	-		LRK54_RS05955	0.68	+0.9
1,282,744	-		LRK54_RS05955	0.68	-2.5
1,282,744	-		LRK54_RS05955	0.68	+0.9
1,282,878	+		LRK54_RS05955	0.88	-0.5
1,282,878	+		LRK54_RS05955	0.88	-0.1
1,282,878	+		LRK54_RS05955	0.88	+0.4
1,282,878	+		LRK54_RS05955	0.88	+0.1
1,282,878	+		LRK54_RS05955	0.88	-0.7
1,282,878	+		LRK54_RS05955	0.88	-0.1
1,282,878	+		LRK54_RS05955	0.88	+0.9
1,282,878	+		LRK54_RS05955	0.88	-0.4
1,282,879	-		LRK54_RS05955	0.88	-1.7
1,282,879	-		LRK54_RS05955	0.88	-0.1
1,282,879	-		LRK54_RS05955	0.88	-0.3
1,282,879	-		LRK54_RS05955	0.88	-1.1
1,282,879	-		LRK54_RS05955	0.88	-0.9
1,282,879	-		LRK54_RS05955	0.88	-1.7
1,282,879	-		LRK54_RS05955	0.88	-2.1
1,282,879	-		LRK54_RS05955	0.88	-0.1
1,282,879	-		LRK54_RS05955	0.88	-1.4
1,282,879	-		LRK54_RS05955	0.88	-0.2
1,282,879	-		LRK54_RS05955	0.88	-0.1
1,282,879	-		LRK54_RS05955	0.88	-1.1
1,282,879	-		LRK54_RS05955	0.88	-0.7
1,282,991	+				+0.9
1,282,991	+				-0.7
1,282,991	+				-1.1
1,282,991	+				-0.1
1,282,991	+				-2.2
1,282,992	-				-1.1
1,282,992	-				+0.9
1,282,992	-				-2.5
1,282,992	-				-0.7
1,282,992	-				+0.9