Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04305

Experiment: 1E-T2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04295 and LRK54_RS04300 are separated by 24 nucleotidesLRK54_RS04300 and LRK54_RS04305 are separated by 53 nucleotidesLRK54_RS04305 and LRK54_RS04310 overlap by 4 nucleotides LRK54_RS04295: LRK54_RS04295 - YbjQ family protein, at 908,753 to 909,097 _RS04295 LRK54_RS04300: LRK54_RS04300 - SDR family oxidoreductase, at 909,122 to 909,955 _RS04300 LRK54_RS04305: LRK54_RS04305 - shikimate kinase, at 910,009 to 910,563 _RS04305 LRK54_RS04310: LRK54_RS04310 - 3-dehydroquinate synthase, at 910,560 to 911,651 _RS04310 Position (kb) 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 909.144 kb on + strandat 909.144 kb on + strandat 909.144 kb on + strandat 909.144 kb on + strandat 909.145 kb on - strandat 909.145 kb on - strandat 909.145 kb on - strandat 909.145 kb on - strandat 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.285 kb on + strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.286 kb on - strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.327 kb on + strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.328 kb on - strand, within LRK54_RS04300at 909.480 kb on + strand, within LRK54_RS04300at 909.480 kb on + strand, within LRK54_RS04300at 909.480 kb on + strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.481 kb on - strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.718 kb on - strand, within LRK54_RS04300at 909.718 kb on - strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.997 kb on + strandat 909.997 kb on + strandat 909.997 kb on + strandat 909.997 kb on + strandat 909.998 kb on - strandat 909.998 kb on - strandat 909.998 kb on - strandat 909.998 kb on - strandat 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.303 kb on + strand, within LRK54_RS04305at 910.303 kb on + strand, within LRK54_RS04305at 910.303 kb on + strand, within LRK54_RS04305

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Per-strain Table

Position Strand Gene LocusTag Fraction 1E-T2
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909,144 + -1.2
909,144 + -0.6
909,144 + +2.6
909,144 + -1.4
909,145 - -1.4
909,145 - -0.8
909,145 - +0.6
909,145 - -1.2
909,285 + LRK54_RS04300 0.20 -1.8
909,285 + LRK54_RS04300 0.20 -0.6
909,285 + LRK54_RS04300 0.20 +0.6
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 -1.4
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 +0.6
909,285 + LRK54_RS04300 0.20 -0.6
909,285 + LRK54_RS04300 0.20 -0.6
909,285 + LRK54_RS04300 0.20 -2.5
909,285 + LRK54_RS04300 0.20 -0.0
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 -0.0
909,285 + LRK54_RS04300 0.20 -0.0
909,285 + LRK54_RS04300 0.20 -1.6
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 -0.8
909,285 + LRK54_RS04300 0.20 -1.0
909,285 + LRK54_RS04300 0.20 -1.0
909,285 + LRK54_RS04300 0.20 -1.8
909,285 + LRK54_RS04300 0.20 -0.6
909,285 + LRK54_RS04300 0.20 +1.0
909,285 + LRK54_RS04300 0.20 -0.7
909,285 + LRK54_RS04300 0.20 +0.3
909,286 - LRK54_RS04300 0.20 -0.9
909,286 - LRK54_RS04300 0.20 +1.6
909,286 - LRK54_RS04300 0.20 -2.8
909,286 - LRK54_RS04300 0.20 +1.0
909,286 - LRK54_RS04300 0.20 +0.1
909,286 - LRK54_RS04300 0.20 -1.5
909,286 - LRK54_RS04300 0.20 +0.8
909,286 - LRK54_RS04300 0.20 -0.4
909,286 - LRK54_RS04300 0.20 -0.4
909,286 - LRK54_RS04300 0.20 -1.6
909,286 - LRK54_RS04300 0.20 +1.0
909,286 - LRK54_RS04300 0.20 +0.4
909,286 - LRK54_RS04300 0.20 +1.0
909,286 - LRK54_RS04300 0.20 -0.0
909,286 - LRK54_RS04300 0.20 -2.2
909,286 - LRK54_RS04300 0.20 -1.4
909,286 - LRK54_RS04300 0.20 +2.6
909,286 - LRK54_RS04300 0.20 -0.0
909,286 - LRK54_RS04300 0.20 -3.2
909,286 - LRK54_RS04300 0.20 -0.8
909,286 - LRK54_RS04300 0.20 -0.0
909,286 - LRK54_RS04300 0.20 +2.0
909,286 - LRK54_RS04300 0.20 -0.0
909,286 - LRK54_RS04300 0.20 -0.0
909,327 + LRK54_RS04300 0.25 -0.4
909,327 + LRK54_RS04300 0.25 -0.0
909,327 + LRK54_RS04300 0.25 -2.2
909,327 + LRK54_RS04300 0.25 +1.0
909,327 + LRK54_RS04300 0.25 -1.4
909,327 + LRK54_RS04300 0.25 -1.8
909,327 + LRK54_RS04300 0.25 -0.0
909,327 + LRK54_RS04300 0.25 -1.0
909,327 + LRK54_RS04300 0.25 -2.2
909,327 + LRK54_RS04300 0.25 -0.6
909,327 + LRK54_RS04300 0.25 +0.4
909,328 - LRK54_RS04300 0.25 +0.2
909,328 - LRK54_RS04300 0.25 +0.2
909,328 - LRK54_RS04300 0.25 -0.6
909,328 - LRK54_RS04300 0.25 -0.6
909,328 - LRK54_RS04300 0.25 +1.0
909,328 - LRK54_RS04300 0.25 -1.0
909,480 + LRK54_RS04300 0.43 -0.6
909,480 + LRK54_RS04300 0.43 -0.6
909,480 + LRK54_RS04300 0.43 -1.4
909,481 - LRK54_RS04300 0.43 -1.0
909,481 - LRK54_RS04300 0.43 +0.4
909,481 - LRK54_RS04300 0.43 -0.6
909,481 - LRK54_RS04300 0.43 +0.1
909,481 - LRK54_RS04300 0.43 +1.0
909,621 + LRK54_RS04300 0.60 -0.0
909,621 + LRK54_RS04300 0.60 -0.0
909,621 + LRK54_RS04300 0.60 -1.6
909,622 - LRK54_RS04300 0.60 -0.4
909,622 - LRK54_RS04300 0.60 +0.4
909,622 - LRK54_RS04300 0.60 -0.4
909,623 + LRK54_RS04300 0.60 -0.0
909,623 + LRK54_RS04300 0.60 -0.6
909,623 + LRK54_RS04300 0.60 -1.8
909,624 - LRK54_RS04300 0.60 +0.6
909,624 - LRK54_RS04300 0.60 -0.8
909,624 - LRK54_RS04300 0.60 -0.6
909,624 - LRK54_RS04300 0.60 -1.8
909,624 - LRK54_RS04300 0.60 -1.6
909,624 - LRK54_RS04300 0.60 -0.4
909,624 - LRK54_RS04300 0.60 -1.4
909,624 - LRK54_RS04300 0.60 -1.4
909,624 - LRK54_RS04300 0.60 -0.8
909,624 - LRK54_RS04300 0.60 +0.2
909,717 + LRK54_RS04300 0.71 -0.0
909,717 + LRK54_RS04300 0.71 -1.0
909,717 + LRK54_RS04300 0.71 -0.4
909,717 + LRK54_RS04300 0.71 -1.1
909,718 - LRK54_RS04300 0.71 +1.0
909,718 - LRK54_RS04300 0.71 +0.1
909,753 + LRK54_RS04300 0.76 -0.8
909,753 + LRK54_RS04300 0.76 -1.4
909,753 + LRK54_RS04300 0.76 +0.2
909,753 + LRK54_RS04300 0.76 -0.4
909,753 + LRK54_RS04300 0.76 -2.5
909,753 + LRK54_RS04300 0.76 +1.0
909,753 + LRK54_RS04300 0.76 -0.8
909,754 - LRK54_RS04300 0.76 -2.2
909,754 - LRK54_RS04300 0.76 -1.5
909,754 - LRK54_RS04300 0.76 -0.8
909,754 - LRK54_RS04300 0.76 +1.0
909,754 - LRK54_RS04300 0.76 -0.0
909,754 - LRK54_RS04300 0.76 -1.4
909,754 - LRK54_RS04300 0.76 +1.4
909,754 - LRK54_RS04300 0.76 -0.4
909,754 - LRK54_RS04300 0.76 +0.6
909,754 - LRK54_RS04300 0.76 -1.0
909,754 - LRK54_RS04300 0.76 -0.6
909,754 - LRK54_RS04300 0.76 -0.4
909,754 - LRK54_RS04300 0.76 -0.9
909,997 + -1.4
909,997 + +2.0
909,997 + -1.4
909,997 + -1.0
909,998 - -0.0
909,998 - -0.0
909,998 - +1.0
909,998 - +1.0
910,090 + LRK54_RS04305 0.15 -0.0
910,090 + LRK54_RS04305 0.15 +1.0
910,090 + LRK54_RS04305 0.15 -0.0
910,090 + LRK54_RS04305 0.15 +1.0
910,090 + LRK54_RS04305 0.15 -0.6
910,090 + LRK54_RS04305 0.15 -1.0
910,303 + LRK54_RS04305 0.53 -0.0
910,303 + LRK54_RS04305 0.53 -0.0
910,303 + LRK54_RS04305 0.53 -0.0

Or see this region's nucleotide sequence