Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15160

Experiment: 1D-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1D-T2
3,346,932	+				+1.1
3,346,932	+				+2.1
3,346,932	+				-0.9
3,346,932	+				+1.1
3,346,932	+				+1.1
3,346,932	+				+1.1
3,346,932	+				-0.9
3,346,932	+				-2.0
3,346,932	+				-0.2
3,346,932	+				-0.9
3,346,932	+				-0.9
3,346,932	+				-1.7
3,346,932	+				+0.1
3,346,932	+				-0.5
3,346,932	+				-0.5
3,346,932	+				-0.5
3,346,932	+				+1.1
3,346,932	+				+0.2
3,346,932	+				+2.1
3,346,932	+				+1.1
3,346,932	+				-0.9
3,346,932	+				+0.1
3,346,932	+				+0.7
3,346,932	+				+1.1
3,346,932	+				-2.8
3,346,932	+				+0.5
3,346,933	-				+1.1
3,346,933	-				-0.9
3,346,933	-				+0.1
3,346,933	-				+1.7
3,346,933	-				-0.9
3,346,933	-				+1.1
3,346,933	-				-1.5
3,346,933	-				+1.7
3,346,933	-				+0.7
3,346,933	-				+1.1
3,346,933	-				-1.2
3,346,933	-				-1.5
3,346,933	-				-0.5
3,346,933	-				+2.1
3,346,933	-				-0.8
3,346,933	-				+0.1
3,346,933	-				-1.2
3,346,933	-				+0.1
3,346,933	-				-1.2
3,346,933	-				-1.7
3,346,933	-				-0.5
3,346,933	-				+0.8
3,346,933	-				-0.2
3,346,933	-				+1.1
3,346,933	-				+0.1
3,346,933	-				+1.1
3,346,933	-				-0.9
3,346,933	-				+0.4
3,346,933	-				+0.7
3,347,262	+		LRK54_RS15155	0.45	+0.1
3,347,262	+		LRK54_RS15155	0.45	-0.2
3,347,262	+		LRK54_RS15155	0.45	-0.5
3,347,262	+		LRK54_RS15155	0.45	-0.5
3,347,262	+		LRK54_RS15155	0.45	-1.7
3,347,262	+		LRK54_RS15155	0.45	-0.9
3,347,262	+		LRK54_RS15155	0.45	+1.1
3,347,262	+		LRK54_RS15155	0.45	-0.5
3,347,263	-		LRK54_RS15155	0.45	+1.1
3,347,263	-		LRK54_RS15155	0.45	-0.5
3,347,263	-		LRK54_RS15155	0.45	-2.2
3,347,263	-		LRK54_RS15155	0.45	+0.1
3,347,263	-		LRK54_RS15155	0.45	-1.0
3,347,263	-		LRK54_RS15155	0.45	+3.5
3,347,263	-		LRK54_RS15155	0.45	+0.9
3,347,263	-		LRK54_RS15155	0.45	-2.0
3,347,263	-		LRK54_RS15155	0.45	-1.5
3,347,263	-		LRK54_RS15155	0.45	-1.7
3,347,263	-		LRK54_RS15155	0.45	+1.1
3,347,448	+		LRK54_RS15155	0.65	+1.7
3,347,448	+		LRK54_RS15155	0.65	+0.7
3,347,448	+		LRK54_RS15155	0.65	-0.9
3,347,448	+		LRK54_RS15155	0.65	+0.4
3,347,448	+		LRK54_RS15155	0.65	-0.9
3,347,449	-		LRK54_RS15155	0.65	-0.7
3,347,449	-		LRK54_RS15155	0.65	-0.6
3,347,449	-		LRK54_RS15155	0.65	-1.2
3,347,449	-		LRK54_RS15155	0.65	-0.3
3,347,535	+		LRK54_RS15155	0.75	-2.2
3,347,535	+		LRK54_RS15155	0.75	-1.3
3,347,535	+		LRK54_RS15155	0.75	+0.9
3,347,535	+		LRK54_RS15155	0.75	+1.1
3,347,535	+		LRK54_RS15155	0.75	-1.7
3,347,535	+		LRK54_RS15155	0.75	+0.7
3,347,535	+		LRK54_RS15155	0.75	+1.9
3,347,535	+		LRK54_RS15155	0.75	+1.7
3,347,535	+		LRK54_RS15155	0.75	+1.1
3,347,536	-		LRK54_RS15155	0.75	+1.3
3,347,536	-		LRK54_RS15155	0.75	-1.1
3,347,536	-		LRK54_RS15155	0.75	-0.2
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,536	-		LRK54_RS15155	0.75	-0.5
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,536	-		LRK54_RS15155	0.75	+0.3
3,347,536	-		LRK54_RS15155	0.75	-0.5
3,347,536	-		LRK54_RS15155	0.75	-1.2
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,536	-		LRK54_RS15155	0.75	-2.5
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,536	-		LRK54_RS15155	0.75	+1.1
3,347,536	-		LRK54_RS15155	0.75	+0.1
3,347,577	+		LRK54_RS15155	0.79	+0.1
3,347,577	+		LRK54_RS15155	0.79	-0.5
3,347,577	+		LRK54_RS15155	0.79	-1.5
3,347,577	+		LRK54_RS15155	0.79	+0.1
3,347,577	+		LRK54_RS15155	0.79	-1.5
3,347,577	+		LRK54_RS15155	0.79	-1.2
3,347,577	+		LRK54_RS15155	0.79	+1.1
3,347,577	+		LRK54_RS15155	0.79	-0.5
3,347,577	+		LRK54_RS15155	0.79	+0.5
3,347,577	+		LRK54_RS15155	0.79	+1.1
3,347,577	+		LRK54_RS15155	0.79	-2.2
3,347,577	+		LRK54_RS15155	0.79	+0.1
3,347,577	+		LRK54_RS15155	0.79	-0.9
3,347,577	+		LRK54_RS15155	0.79	-1.1
3,347,577	+		LRK54_RS15155	0.79	-1.2
3,347,577	+		LRK54_RS15155	0.79	-0.2
3,347,578	-		LRK54_RS15155	0.80	-1.5
3,347,578	-		LRK54_RS15155	0.80	+1.1
3,347,578	-		LRK54_RS15155	0.80	-1.2
3,347,578	-		LRK54_RS15155	0.80	+0.1
3,347,578	-		LRK54_RS15155	0.80	-0.7
3,347,578	-		LRK54_RS15155	0.80	-0.5
3,347,578	-		LRK54_RS15155	0.80	-1.5
3,347,578	-		LRK54_RS15155	0.80	-0.9
3,347,578	-		LRK54_RS15155	0.80	+1.9
3,347,598	+		LRK54_RS15155	0.82	-0.1
3,347,598	+		LRK54_RS15155	0.82	-1.1
3,347,598	+		LRK54_RS15155	0.82	+1.1
3,347,598	+		LRK54_RS15155	0.82	+0.1
3,347,598	+		LRK54_RS15155	0.82	-0.3
3,347,598	+		LRK54_RS15155	0.82	-1.6
3,347,598	+		LRK54_RS15155	0.82	+0.7
3,347,598	+		LRK54_RS15155	0.82	-1.2
3,347,598	+		LRK54_RS15155	0.82	-0.6
3,347,598	+		LRK54_RS15155	0.82	-0.5
3,347,598	+		LRK54_RS15155	0.82	+1.1
3,347,598	+		LRK54_RS15155	0.82	-0.5
3,347,598	+		LRK54_RS15155	0.82	-1.6
3,347,598	+		LRK54_RS15155	0.82	+0.1
3,347,598	+		LRK54_RS15155	0.82	+0.1
3,347,598	+		LRK54_RS15155	0.82	-1.5
3,347,599	-		LRK54_RS15155	0.82	+1.1
3,347,599	-		LRK54_RS15155	0.82	+0.5
3,347,599	-		LRK54_RS15155	0.82	-1.5
3,347,599	-		LRK54_RS15155	0.82	-2.9
3,347,599	-		LRK54_RS15155	0.82	+0.1
3,347,599	-		LRK54_RS15155	0.82	+1.1
3,347,599	-		LRK54_RS15155	0.82	-1.1
3,347,599	-		LRK54_RS15155	0.82	+1.1
3,347,599	-		LRK54_RS15155	0.82	+0.1
3,347,599	-		LRK54_RS15155	0.82	+0.3
3,347,599	-		LRK54_RS15155	0.82	-0.9
3,347,599	-		LRK54_RS15155	0.82	-0.5
3,347,599	-		LRK54_RS15155	0.82	+1.1
3,347,599	-		LRK54_RS15155	0.82	+2.1
3,347,599	-		LRK54_RS15155	0.82	+0.5
3,347,599	-		LRK54_RS15155	0.82	-0.9
3,347,599	-		LRK54_RS15155	0.82	-1.5
3,347,599	-		LRK54_RS15155	0.82	+0.1
3,347,649	+		LRK54_RS15155	0.87	-2.3
3,347,649	+		LRK54_RS15155	0.87	+1.1
3,347,649	+		LRK54_RS15155	0.87	+0.5
3,347,649	+		LRK54_RS15155	0.87	+0.5
3,347,649	+		LRK54_RS15155	0.87	+1.1
3,347,649	+		LRK54_RS15155	0.87	+0.8
3,347,649	+		LRK54_RS15155	0.87	-0.7
3,347,649	+		LRK54_RS15155	0.87	-0.9
3,347,649	+		LRK54_RS15155	0.87	+0.1
3,347,649	+		LRK54_RS15155	0.87	+1.1
3,347,649	+		LRK54_RS15155	0.87	-0.5
3,347,649	+		LRK54_RS15155	0.87	-1.2
3,347,650	-		LRK54_RS15155	0.88	+1.7
3,347,650	-		LRK54_RS15155	0.88	-0.5
3,347,650	-		LRK54_RS15155	0.88	+1.1
3,347,650	-		LRK54_RS15155	0.88	+0.1
3,347,650	-		LRK54_RS15155	0.88	+2.7
3,347,650	-		LRK54_RS15155	0.88	-1.7
3,347,650	-		LRK54_RS15155	0.88	-1.2
3,347,650	-		LRK54_RS15155	0.88	+1.1
3,347,650	-		LRK54_RS15155	0.88	-0.5
3,347,650	-		LRK54_RS15155	0.88	+0.1
3,347,650	-		LRK54_RS15155	0.88	+1.1
3,347,650	-		LRK54_RS15155	0.88	-0.5
3,347,650	-		LRK54_RS15155	0.88	+0.1
3,347,650	-		LRK54_RS15155	0.88	+0.1
3,347,745	+				-0.7
3,347,745	+				+1.5
3,347,745	+				+1.1
3,347,746	-				+0.7
3,347,767	+				-0.6
3,347,767	+				+0.5
3,347,767	+				+0.1
3,347,767	+				+0.1
3,347,827	+				+2.1
3,347,827	+				-1.9
3,347,827	+				+0.0
3,347,827	+				-0.5
3,347,827	+				+0.4
3,347,827	+				-1.7
3,347,828	-				+0.7
3,347,828	-				-0.4
3,347,828	-				+0.3
3,347,828	-				-0.5
3,347,828	-				+1.1
3,347,828	-				+0.1
3,347,828	-				-2.4
3,347,828	-				-1.9
3,347,853	+				-0.5
3,347,853	+				-1.2
3,347,853	+				+1.1
3,347,853	+				+1.1
3,347,853	+				-1.2
3,347,853	+				+1.1
3,347,853	+				+1.1
3,347,853	+				-2.3
3,347,853	+				-1.2
3,347,853	+				+2.7
3,347,853	+				-0.9
3,347,853	+				-0.9
3,347,853	+				-1.1
3,347,853	+				+1.4
3,347,853	+				-2.0
3,347,853	+				-0.9
3,347,853	+				+2.1
3,347,854	-				-0.9
3,347,854	-				+1.1
3,347,854	-				-0.5
3,347,854	-				+2.1
3,347,854	-				+0.5
3,347,854	-				-0.5
3,347,854	-				-0.2
3,347,854	-				-0.9
3,347,854	-				+0.1
3,347,854	-				-1.4
3,347,854	-				+0.1
3,347,854	-				+1.1
3,347,854	-				+0.5
3,347,854	-				-1.5
3,347,854	-				+0.1
3,347,854	-				+0.5
3,347,854	-				+0.1
3,347,854	-				+0.1
3,347,854	-				+0.9
3,347,854	-				+0.1
3,347,854	-				+1.1
3,347,854	-				-0.5
3,347,854	-				-0.5
3,347,854	-				-0.5
3,347,887	+				-0.5
3,347,887	+				-1.3
3,347,887	+				+0.1
3,347,888	-				+1.1
3,347,888	-				-1.2
3,347,888	-				-1.2
3,347,888	-				-0.5
3,347,888	-				+0.1
3,347,888	-				-1.7
3,347,888	-				-1.7
3,347,888	-				+0.4
3,347,888	-				+1.1
3,347,888	-				+1.1
3,347,888	-				+1.1
3,347,888	-				-0.9
3,347,888	-				+0.1
3,347,888	-				+1.1
3,347,905	+				-0.5
3,347,905	+				+0.1
3,347,905	+				-0.6
3,347,905	+				-1.2
3,347,905	+				-0.2
3,347,905	+				+3.1
3,347,905	+				-0.9
3,347,905	+				+0.3
3,347,906	-				-0.2
3,347,906	-				-0.5
3,347,906	-				+1.7
3,347,906	-				-1.4
3,347,906	-				+2.1
3,347,906	-				+1.1
3,347,999	+		LRK54_RS15160	0.22	-1.1
3,347,999	+		LRK54_RS15160	0.22	-0.9
3,347,999	+		LRK54_RS15160	0.22	-0.9
3,347,999	+		LRK54_RS15160	0.22	-1.2
3,348,000	-		LRK54_RS15160	0.22	+0.1
3,348,000	-		LRK54_RS15160	0.22	-0.2
3,348,011	+		LRK54_RS15160	0.24	-1.2
3,348,011	+		LRK54_RS15160	0.24	-0.9
3,348,011	+		LRK54_RS15160	0.24	+0.1
3,348,011	+		LRK54_RS15160	0.24	-0.5
3,348,012	-		LRK54_RS15160	0.24	+0.9
3,348,012	-		LRK54_RS15160	0.24	-0.9
3,348,033	+		LRK54_RS15160	0.29	-0.5
3,348,033	+		LRK54_RS15160	0.29	+0.5
3,348,033	+		LRK54_RS15160	0.29	+1.1
3,348,033	+		LRK54_RS15160	0.29	+0.1
3,348,034	-		LRK54_RS15160	0.29	+0.1
3,348,034	-		LRK54_RS15160	0.29	-0.9
3,348,034	-		LRK54_RS15160	0.29	+0.3
3,348,034	-		LRK54_RS15160	0.29	-1.0
3,348,034	-		LRK54_RS15160	0.29	-1.2
3,348,158	+		LRK54_RS15160	0.54	+0.9
3,348,158	+		LRK54_RS15160	0.54	+0.1
3,348,158	+		LRK54_RS15160	0.54	-0.9
3,348,158	+		LRK54_RS15160	0.54	+1.1
3,348,158	+		LRK54_RS15160	0.54	+0.1
3,348,158	+		LRK54_RS15160	0.54	-0.9
3,348,158	+		LRK54_RS15160	0.54	-0.3
3,348,158	+		LRK54_RS15160	0.54	+2.1
3,348,158	+		LRK54_RS15160	0.54	-1.3
3,348,158	+		LRK54_RS15160	0.54	+1.1
3,348,158	+		LRK54_RS15160	0.54	-0.1
3,348,158	+		LRK54_RS15160	0.54	-1.2
3,348,158	+		LRK54_RS15160	0.54	+1.1
3,348,158	+		LRK54_RS15160	0.54	-1.5
3,348,158	+		LRK54_RS15160	0.54	-1.3
3,348,158	+		LRK54_RS15160	0.54	-0.6
3,348,158	+		LRK54_RS15160	0.54	+2.1
3,348,158	+		LRK54_RS15160	0.54	-0.5
3,348,158	+		LRK54_RS15160	0.54	+1.1
3,348,158	+		LRK54_RS15160	0.54	+1.7
3,348,158	+		LRK54_RS15160	0.54	-1.5
3,348,158	+		LRK54_RS15160	0.54	+1.1
3,348,158	+		LRK54_RS15160	0.54	-0.5
3,348,159	-		LRK54_RS15160	0.54	-1.6
3,348,159	-		LRK54_RS15160	0.54	-0.5
3,348,159	-		LRK54_RS15160	0.54	-0.3
3,348,159	-		LRK54_RS15160	0.54	+0.1
3,348,159	-		LRK54_RS15160	0.54	+1.4
3,348,159	-		LRK54_RS15160	0.54	-0.0
3,348,159	-		LRK54_RS15160	0.54	+0.1
3,348,159	-		LRK54_RS15160	0.54	-0.6
3,348,159	-		LRK54_RS15160	0.54	-0.7
3,348,159	-		LRK54_RS15160	0.54	-0.7
3,348,159	-		LRK54_RS15160	0.54	+1.1
3,348,159	-		LRK54_RS15160	0.54	+1.1
3,348,159	-		LRK54_RS15160	0.54	+1.1
3,348,159	-		LRK54_RS15160	0.54	-0.7
3,348,159	-		LRK54_RS15160	0.54	+0.1
3,348,159	-		LRK54_RS15160	0.54	-2.2
3,348,159	-		LRK54_RS15160	0.54	-1.2
3,348,159	-		LRK54_RS15160	0.54	+0.1
3,348,159	-		LRK54_RS15160	0.54	+0.5
3,348,159	-		LRK54_RS15160	0.54	+0.4
3,348,159	-		LRK54_RS15160	0.54	+2.7
3,348,242	+		LRK54_RS15160	0.71	+0.1
3,348,242	+		LRK54_RS15160	0.71	-0.5
3,348,243	-		LRK54_RS15160	0.71	+0.1
3,348,243	-		LRK54_RS15160	0.71	-0.9
3,348,243	-		LRK54_RS15160	0.71	-0.2
3,348,243	-		LRK54_RS15160	0.71	-0.5
3,348,246	+		LRK54_RS15160	0.72	-0.4
3,348,246	+		LRK54_RS15160	0.72	+1.1
3,348,246	+		LRK54_RS15160	0.72	-1.7
3,348,246	+		LRK54_RS15160	0.72	+0.1
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