Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13785

Experiment: 1C-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1C-T2
3,076,091	+				+1.3
3,076,091	+				+1.3
3,076,092	-				+1.3
3,076,092	-				+1.3
3,076,092	-				+1.3
3,076,092	-				+1.3
3,076,092	-				+1.3
3,076,213	+				-1.0
3,076,213	+				+0.3
3,076,213	+				-0.3
3,076,213	+				+0.3
3,076,213	+				+1.3
3,076,213	+				+1.3
3,076,213	+				+0.3
3,076,213	+				+1.3
3,076,213	+				-0.3
3,076,214	-				+1.3
3,076,214	-				+1.3
3,076,214	-				+1.3
3,076,214	-				+1.3
3,076,214	-				+0.3
3,076,224	+				-0.7
3,076,224	+				+0.3
3,076,224	+				+1.3
3,076,224	+				-0.3
3,076,224	+				+1.3
3,076,224	+				+1.3
3,076,224	+				-0.3
3,076,224	+				+0.3
3,076,224	+				+0.3
3,076,224	+				+0.3
3,076,224	+				+1.3
3,076,224	+				+0.7
3,076,224	+				-0.3
3,076,224	+				+0.8
3,076,224	+				-0.7
3,076,224	+				+1.3
3,076,225	-				+1.3
3,076,225	-				-0.3
3,076,225	-				+0.3
3,076,225	-				+1.3
3,076,225	-				-0.7
3,076,225	-				+0.0
3,076,225	-				+0.3
3,076,225	-				+1.3
3,076,225	-				+1.3
3,076,225	-				-0.3
3,076,225	-				+1.3
3,076,225	-				-0.3
3,076,225	-				-0.7
3,076,225	-				-1.0
3,076,225	-				+0.3
3,076,290	+		LRK54_RS13780	0.16	+2.3
3,076,290	+		LRK54_RS13780	0.16	+0.3
3,076,290	+		LRK54_RS13780	0.16	+1.3
3,076,290	+		LRK54_RS13780	0.16	+0.3
3,076,290	+		LRK54_RS13780	0.16	+1.3
3,076,290	+		LRK54_RS13780	0.16	-1.3
3,076,290	+		LRK54_RS13780	0.16	+0.3
3,076,290	+		LRK54_RS13780	0.16	+0.7
3,076,291	-		LRK54_RS13780	0.17	+1.3
3,076,291	-		LRK54_RS13780	0.17	+0.3
3,076,291	-		LRK54_RS13780	0.17	+0.3
3,076,291	-		LRK54_RS13780	0.17	+1.3
3,076,291	-		LRK54_RS13780	0.17	+0.3
3,076,291	-		LRK54_RS13780	0.17	+1.3
3,076,291	-		LRK54_RS13780	0.17	+0.9
3,076,301	-		LRK54_RS13780	0.18	-1.5
3,076,350	+		LRK54_RS13780	0.26	+1.3
3,076,350	+		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+0.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,351	-		LRK54_RS13780	0.26	+0.3
3,076,351	-		LRK54_RS13780	0.26	+1.3
3,076,416	+		LRK54_RS13780	0.36	-0.3
3,076,417	-		LRK54_RS13780	0.36	+0.3
3,076,417	-		LRK54_RS13780	0.36	-0.3
3,076,417	-		LRK54_RS13780	0.36	-0.5
3,076,417	-		LRK54_RS13780	0.36	+1.3
3,076,734	+		LRK54_RS13780	0.86	+1.3
3,076,734	+		LRK54_RS13780	0.86	+2.3
3,076,735	-		LRK54_RS13780	0.86	+1.3
3,076,852	+				+0.7
3,076,852	+				-0.5
3,076,852	+				+0.7
3,076,852	+				-2.1
3,076,852	+				+0.7
3,076,853	-				+0.7
3,076,870	+				-0.8
3,076,870	+				-0.7
3,076,870	+				+0.3
3,076,870	+				+1.3
3,076,870	+				+0.3
3,076,870	+				-0.7
3,076,870	+				-0.7
3,076,870	+				+1.3
3,076,870	+				-0.3
3,076,870	+				-0.3
3,076,870	+				+1.9
3,076,871	-				+2.3
3,076,871	-				+1.3
3,076,871	-				-0.3
3,076,871	-				-0.7
3,076,871	-				+1.9
3,076,871	-				-0.3
3,076,871	-				+2.3
3,076,871	-				-1.3
3,076,871	-				-0.3
3,076,871	-				+2.3
3,076,903	+		LRK54_RS13785	0.16	+0.6
3,076,903	+		LRK54_RS13785	0.16	-0.3
3,076,903	+		LRK54_RS13785	0.16	-0.3
3,076,903	+		LRK54_RS13785	0.16	+0.7
3,076,903	+		LRK54_RS13785	0.16	-1.1
3,076,903	+		LRK54_RS13785	0.16	-1.3
3,076,903	+		LRK54_RS13785	0.16	-0.7
3,076,903	+		LRK54_RS13785	0.16	+0.0
3,076,903	+		LRK54_RS13785	0.16	-0.1
3,076,903	+		LRK54_RS13785	0.16	-1.5
3,076,903	+		LRK54_RS13785	0.16	+1.3
3,076,904	-		LRK54_RS13785	0.16	-1.0
3,076,904	-		LRK54_RS13785	0.16	+1.1
3,076,904	-		LRK54_RS13785	0.16	-0.5
3,076,904	-		LRK54_RS13785	0.16	+1.9
3,076,904	-		LRK54_RS13785	0.16	+2.3
3,076,904	-		LRK54_RS13785	0.16	+1.3
3,076,904	-		LRK54_RS13785	0.16	+0.3
3,076,904	-		LRK54_RS13785	0.16	+0.3
3,076,904	-		LRK54_RS13785	0.16	+2.9
3,077,098	+		LRK54_RS13785	0.61	+0.3
3,077,098	+		LRK54_RS13785	0.61	-0.7
3,077,098	+		LRK54_RS13785	0.61	+1.1
3,077,098	+		LRK54_RS13785	0.61	-1.7
3,077,098	+		LRK54_RS13785	0.61	+1.3
3,077,099	-		LRK54_RS13785	0.61	-0.5
3,077,099	-		LRK54_RS13785	0.61	+1.3
3,077,099	-		LRK54_RS13785	0.61	-0.3
3,077,099	-		LRK54_RS13785	0.61	-0.3
3,077,099	-		LRK54_RS13785	0.61	+1.3
3,077,099	-		LRK54_RS13785	0.61	-1.4
3,077,099	-		LRK54_RS13785	0.61	+0.3
3,077,099	-		LRK54_RS13785	0.61	-1.5
3,077,266	+				+2.3
3,077,266	+				-1.7
3,077,266	+				+0.7
3,077,266	+				+0.0
3,077,266	+				+0.0
3,077,267	-				-2.0
3,077,267	-				+0.3
3,077,267	-				-0.1
3,077,267	-				-2.0
3,077,267	-				-0.1
3,077,267	-				-0.1
3,077,267	-				+0.3
3,077,267	-				+1.0
3,077,267	-				+1.3
3,077,311	+				+1.3
3,077,311	+				+1.3
3,077,311	+				-0.1
3,077,311	+				+1.3
3,077,311	+				-0.7
3,077,311	+				-0.3
3,077,311	+				+1.3
3,077,312	-				-1.0
3,077,312	-				-1.0
3,077,312	-				-0.7
3,077,312	-				-0.7
3,077,312	-				-1.7
3,077,363	-		LRK54_RS13790	0.12	-1.1
3,077,363	-		LRK54_RS13790	0.12	+0.3
3,077,501	+		LRK54_RS13790	0.47	-0.3
3,077,501	+		LRK54_RS13790	0.47	-1.8
3,077,502	-		LRK54_RS13790	0.47	-0.3
3,077,836	+				+1.3
3,077,836	+				-1.5
3,077,837	-				+1.0
3,077,844	+		LRK54_RS13795	0.11	-1.7
3,077,844	+		LRK54_RS13795	0.11	+0.3
3,077,845	-		LRK54_RS13795	0.11	-1.8
3,077,845	-		LRK54_RS13795	0.11	-0.9
3,077,845	-		LRK54_RS13795	0.11	+0.1
3,077,907	+		LRK54_RS13795	0.18	+1.3
3,077,907	+		LRK54_RS13795	0.18	-0.7
3,077,907	+		LRK54_RS13795	0.18	+0.6
3,077,907	+		LRK54_RS13795	0.18	-0.7
3,077,908	-		LRK54_RS13795	0.18	-1.1
3,077,908	-		LRK54_RS13795	0.18	+0.3
3,077,908	-		LRK54_RS13795	0.18	+1.3
3,077,908	-		LRK54_RS13795	0.18	-0.8
3,078,114	+		LRK54_RS13795	0.42	-0.3
3,078,114	+		LRK54_RS13795	0.42	+2.9
3,078,114	+		LRK54_RS13795	0.42	+0.3
3,078,115	-		LRK54_RS13795	0.42	-0.7
3,078,115	-		LRK54_RS13795	0.42	-0.4
3,078,115	-		LRK54_RS13795	0.42	-0.7
3,078,115	-		LRK54_RS13795	0.42	-1.7
3,078,115	-		LRK54_RS13795	0.42	-0.1
3,078,115	-		LRK54_RS13795	0.42	-0.1
3,078,115	-		LRK54_RS13795	0.42	-0.4
3,078,115	-		LRK54_RS13795	0.42	-2.4
3,078,159	+		LRK54_RS13795	0.47	-1.3
3,078,159	+		LRK54_RS13795	0.47	-1.8
3,078,160	-		LRK54_RS13795	0.47	+1.1
3,078,160	-		LRK54_RS13795	0.47	+0.3
3,078,240	+		LRK54_RS13795	0.57	-0.8
3,078,240	+		LRK54_RS13795	0.57	-0.3
3,078,240	+		LRK54_RS13795	0.57	+0.7
3,078,240	+		LRK54_RS13795	0.57	-1.3
3,078,241	-		LRK54_RS13795	0.57	-1.0
3,078,241	-		LRK54_RS13795	0.57	+0.3
3,078,241	-		LRK54_RS13795	0.57	-0.7
3,078,241	-		LRK54_RS13795	0.57	-2.4
3,078,241	-		LRK54_RS13795	0.57	+0.3
3,078,241	-		LRK54_RS13795	0.57	-1.7