Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17415

Experiment: 1A-T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1A-T2
3,804,803	+		LRK54_RS17410	0.60	-0.4
3,804,803	+		LRK54_RS17410	0.60	+0.4
3,804,803	+		LRK54_RS17410	0.60	+0.4
3,804,803	+		LRK54_RS17410	0.60	+0.2
3,804,804	-		LRK54_RS17410	0.60	+0.4
3,804,804	-		LRK54_RS17410	0.60	+0.8
3,804,804	-		LRK54_RS17410	0.60	-0.2
3,804,804	-		LRK54_RS17410	0.60	-0.2
3,804,804	-		LRK54_RS17410	0.60	+1.4
3,804,804	-		LRK54_RS17410	0.60	+1.4
3,804,839	+		LRK54_RS17410	0.61	-0.2
3,804,840	-		LRK54_RS17410	0.61	+0.4
3,804,840	-		LRK54_RS17410	0.61	-1.6
3,804,939	+		LRK54_RS17410	0.65	+2.9
3,804,939	+		LRK54_RS17410	0.65	-1.8
3,804,940	-		LRK54_RS17410	0.65	-1.7
3,804,944	+		LRK54_RS17410	0.65	+0.4
3,804,944	+		LRK54_RS17410	0.65	-0.5
3,804,944	+		LRK54_RS17410	0.65	+1.4
3,804,944	+		LRK54_RS17410	0.65	-0.6
3,804,944	+		LRK54_RS17410	0.65	+0.4
3,804,944	+		LRK54_RS17410	0.65	+0.6
3,804,944	+		LRK54_RS17410	0.65	-0.2
3,804,944	+		LRK54_RS17410	0.65	+1.4
3,804,944	+		LRK54_RS17410	0.65	-0.6
3,804,944	+		LRK54_RS17410	0.65	-0.8
3,804,944	+		LRK54_RS17410	0.65	+1.4
3,804,944	+		LRK54_RS17410	0.65	-0.1
3,804,944	+		LRK54_RS17410	0.65	+0.2
3,804,945	-		LRK54_RS17410	0.65	-0.8
3,804,945	-		LRK54_RS17410	0.65	+0.8
3,804,945	-		LRK54_RS17410	0.65	-1.8
3,804,945	-		LRK54_RS17410	0.65	-0.6
3,804,945	-		LRK54_RS17410	0.65	-1.0
3,804,945	-		LRK54_RS17410	0.65	+0.4
3,804,945	-		LRK54_RS17410	0.65	+1.4
3,804,945	-		LRK54_RS17410	0.65	+0.0
3,804,945	-		LRK54_RS17410	0.65	-0.6
3,804,945	-		LRK54_RS17410	0.65	+0.8
3,804,945	-		LRK54_RS17410	0.65	+0.8
3,805,050	+		LRK54_RS17410	0.70	-1.5
3,805,050	+		LRK54_RS17410	0.70	-0.2
3,805,051	-		LRK54_RS17410	0.70	+1.4
3,805,051	-		LRK54_RS17410	0.70	+0.8
3,805,051	-		LRK54_RS17410	0.70	-0.2
3,805,051	-		LRK54_RS17410	0.70	+0.4
3,805,051	-		LRK54_RS17410	0.70	-2.0
3,805,051	-		LRK54_RS17410	0.70	+1.4
3,805,051	-		LRK54_RS17410	0.70	+0.4
3,805,052	+		LRK54_RS17410	0.70	+0.4
3,805,052	+		LRK54_RS17410	0.70	-0.6
3,805,052	+		LRK54_RS17410	0.70	+0.8
3,805,052	+		LRK54_RS17410	0.70	-0.6
3,805,052	+		LRK54_RS17410	0.70	-2.2
3,805,052	+		LRK54_RS17410	0.70	+0.4
3,805,052	+		LRK54_RS17410	0.70	-1.0
3,805,052	+		LRK54_RS17410	0.70	-0.2
3,805,052	+		LRK54_RS17410	0.70	+0.4
3,805,052	+		LRK54_RS17410	0.70	+0.4
3,805,052	+		LRK54_RS17410	0.70	+1.4
3,805,052	+		LRK54_RS17410	0.70	+0.1
3,805,052	+		LRK54_RS17410	0.70	-0.6
3,805,052	+		LRK54_RS17410	0.70	-0.5
3,805,052	+		LRK54_RS17410	0.70	-0.2
3,805,052	+		LRK54_RS17410	0.70	-0.6
3,805,052	+		LRK54_RS17410	0.70	-2.1
3,805,052	+		LRK54_RS17410	0.70	-0.2
3,805,052	+		LRK54_RS17410	0.70	+0.4
3,805,052	+		LRK54_RS17410	0.70	+1.4
3,805,052	+		LRK54_RS17410	0.70	+0.0
3,805,052	+		LRK54_RS17410	0.70	-1.4
3,805,052	+		LRK54_RS17410	0.70	-1.2
3,805,053	-		LRK54_RS17410	0.70	-1.0
3,805,053	-		LRK54_RS17410	0.70	+1.9
3,805,053	-		LRK54_RS17410	0.70	-1.0
3,805,053	-		LRK54_RS17410	0.70	-1.5
3,805,053	-		LRK54_RS17410	0.70	+0.4
3,805,053	-		LRK54_RS17410	0.70	-0.3
3,805,053	-		LRK54_RS17410	0.70	+1.4
3,805,053	-		LRK54_RS17410	0.70	+1.9
3,805,053	-		LRK54_RS17410	0.70	-0.6
3,805,053	-		LRK54_RS17410	0.70	+1.4
3,805,053	-		LRK54_RS17410	0.70	-0.9
3,805,053	-		LRK54_RS17410	0.70	-0.6
3,805,053	-		LRK54_RS17410	0.70	+2.4
3,805,053	-		LRK54_RS17410	0.70	+0.4
3,805,053	-		LRK54_RS17410	0.70	+1.4
3,805,053	-		LRK54_RS17410	0.70	-1.0
3,805,115	+		LRK54_RS17410	0.73	-0.5
3,805,115	+		LRK54_RS17410	0.73	-2.3
3,805,115	+		LRK54_RS17410	0.73	+1.4
3,805,115	+		LRK54_RS17410	0.73	+0.1
3,805,115	+		LRK54_RS17410	0.73	-0.6
3,805,115	+		LRK54_RS17410	0.73	+0.4
3,805,115	+		LRK54_RS17410	0.73	-0.2
3,805,115	+		LRK54_RS17410	0.73	-1.0
3,805,115	+		LRK54_RS17410	0.73	-1.6
3,805,115	+		LRK54_RS17410	0.73	+0.1
3,805,115	+		LRK54_RS17410	0.73	+0.4
3,805,115	+		LRK54_RS17410	0.73	+0.6
3,805,115	+		LRK54_RS17410	0.73	+1.4
3,805,116	-		LRK54_RS17410	0.73	+1.4
3,805,116	-		LRK54_RS17410	0.73	+0.0
3,805,116	-		LRK54_RS17410	0.73	+0.4
3,805,116	-		LRK54_RS17410	0.73	+1.4
3,805,116	-		LRK54_RS17410	0.73	+0.1
3,805,116	-		LRK54_RS17410	0.73	+1.4
3,805,116	-		LRK54_RS17410	0.73	-0.5
3,805,116	-		LRK54_RS17410	0.73	+1.4
3,805,116	-		LRK54_RS17410	0.73	+0.4
3,805,116	-		LRK54_RS17410	0.73	-1.1
3,805,116	-		LRK54_RS17410	0.73	-0.5
3,805,116	-		LRK54_RS17410	0.73	+0.4
3,805,116	-		LRK54_RS17410	0.73	+0.8
3,805,305	+		LRK54_RS17410	0.80	-0.2
3,805,306	-		LRK54_RS17410	0.80	-0.6
3,805,316	+		LRK54_RS17410	0.81	-0.7
3,805,490	+		LRK54_RS17410	0.88	-0.2
3,805,490	+		LRK54_RS17410	0.88	+1.4
3,805,491	-		LRK54_RS17410	0.88	-1.8
3,805,491	-		LRK54_RS17410	0.88	-0.2
3,805,529	+		LRK54_RS17410	0.90	+1.4
3,805,529	+		LRK54_RS17410	0.90	+0.4
3,805,529	+		LRK54_RS17410	0.90	-0.2
3,805,529	+		LRK54_RS17410	0.90	+0.4
3,805,529	+		LRK54_RS17410	0.90	-0.2
3,805,530	-		LRK54_RS17410	0.90	+0.8
3,805,530	-		LRK54_RS17410	0.90	-1.5
3,805,530	-		LRK54_RS17410	0.90	+1.9
3,805,530	-		LRK54_RS17410	0.90	+1.1
3,805,649	+				-0.6
3,805,649	+				-0.8
3,805,649	+				+1.4
3,805,649	+				+0.4
3,805,649	+				+0.4
3,805,649	+				-0.2
3,805,649	+				-2.3
3,805,649	+				-0.6
3,805,649	+				-0.2
3,805,650	-				+0.4
3,805,650	-				+1.4
3,805,650	-				+1.4
3,805,650	-				+0.4
3,805,650	-				-0.6
3,805,650	-				-2.6
3,805,650	-				+0.4
3,805,650	-				+1.4
3,805,650	-				-2.0
3,805,650	-				-1.0
3,805,650	-				-0.5
3,805,650	-				+1.4
3,805,650	-				+0.4
3,805,650	-				+1.4
3,805,694	+				+0.4
3,805,694	+				+1.4
3,805,694	+				+1.4
3,805,694	+				-0.2
3,805,694	+				+0.4
3,805,694	+				+0.1
3,805,694	+				-1.2
3,805,694	+				+1.4
3,805,694	+				+0.4
3,805,694	+				-1.1
3,805,694	+				-0.6
3,805,694	+				-0.9
3,805,694	+				+0.4
3,805,694	+				-1.6
3,805,694	+				-0.5
3,805,694	+				-1.5
3,805,694	+				+1.4
3,805,694	+				-0.2
3,805,694	+				-0.2
3,805,694	+				-2.2
3,805,694	+				+2.9
3,805,694	+				+1.4
3,805,694	+				-0.4
3,805,694	+				-2.0
3,805,694	+				+0.4
3,805,694	+				-0.6
3,805,694	+				+0.4
3,805,694	+				+1.4
3,805,695	-				+1.4
3,805,695	-				-0.8
3,805,695	-				-0.2
3,805,695	-				+0.4
3,805,695	-				+2.4
3,805,695	-				+0.4
3,805,695	-				+0.4
3,805,695	-				-0.6
3,805,695	-				-1.5
3,805,695	-				+1.4
3,805,695	-				-0.2
3,805,695	-				-0.3
3,805,695	-				+1.4
3,805,695	-				-0.2
3,805,695	-				-0.8
3,805,695	-				+0.5
3,805,695	-				-1.0
3,805,695	-				+0.0
3,805,695	-				-1.1
3,805,863	+				-0.2
3,805,863	+				-1.2
3,805,863	+				-1.0
3,805,863	+				-0.5
3,805,863	+				+1.4
3,805,863	+				-0.2
3,805,864	-				-0.6
3,805,864	-				-2.5
3,805,864	-				+1.4
3,805,864	-				+1.4
3,806,077	+		LRK54_RS17415	0.23	+0.4
3,806,077	+		LRK54_RS17415	0.23	+0.5
3,806,077	+		LRK54_RS17415	0.23	+0.4
3,806,077	+		LRK54_RS17415	0.23	-0.2
3,806,077	+		LRK54_RS17415	0.23	+0.4
3,806,077	+		LRK54_RS17415	0.23	-1.5
3,806,077	+		LRK54_RS17415	0.23	-1.5
3,806,077	+		LRK54_RS17415	0.23	+0.2
3,806,077	+		LRK54_RS17415	0.23	-0.2
3,806,077	+		LRK54_RS17415	0.23	-0.6
3,806,077	+		LRK54_RS17415	0.23	-0.8
3,806,078	-		LRK54_RS17415	0.23	-1.5
3,806,078	-		LRK54_RS17415	0.23	+1.4
3,806,078	-		LRK54_RS17415	0.23	+0.4
3,806,078	-		LRK54_RS17415	0.23	+0.8
3,806,078	-		LRK54_RS17415	0.23	+0.4
3,806,078	-		LRK54_RS17415	0.23	+1.4
3,806,078	-		LRK54_RS17415	0.23	-0.2
3,806,078	-		LRK54_RS17415	0.23	+0.0
3,806,078	-		LRK54_RS17415	0.23	+0.4
3,806,078	-		LRK54_RS17415	0.23	+0.4
3,806,179	+		LRK54_RS17415	0.32	-1.1
3,806,179	+		LRK54_RS17415	0.32	+0.4
3,806,180	-		LRK54_RS17415	0.32	-0.8
3,806,180	-		LRK54_RS17415	0.32	-0.6
3,806,180	-		LRK54_RS17415	0.32	-0.4
3,806,180	-		LRK54_RS17415	0.32	+0.4
3,806,180	-		LRK54_RS17415	0.32	-0.0
3,806,180	-		LRK54_RS17415	0.32	-1.5
3,806,180	-		LRK54_RS17415	0.32	-0.6
3,806,180	-		LRK54_RS17415	0.32	+0.1
3,806,230	+		LRK54_RS17415	0.36	-1.5
3,806,230	+		LRK54_RS17415	0.36	+0.8
3,806,230	+		LRK54_RS17415	0.36	-0.2
3,806,230	+		LRK54_RS17415	0.36	-1.0
3,806,230	+		LRK54_RS17415	0.36	+0.1
3,806,230	+		LRK54_RS17415	0.36	+1.4
3,806,230	+		LRK54_RS17415	0.36	-0.6
3,806,230	+		LRK54_RS17415	0.36	+1.4
3,806,230	+		LRK54_RS17415	0.36	-0.4
3,806,230	+		LRK54_RS17415	0.36	+0.4
3,806,230	+		LRK54_RS17415	0.36	+1.4
3,806,230	+		LRK54_RS17415	0.36	-0.2
3,806,230	+		LRK54_RS17415	0.36	-0.6
3,806,230	+		LRK54_RS17415	0.36	-0.2
3,806,230	+		LRK54_RS17415	0.36	+0.1
3,806,231	-		LRK54_RS17415	0.36	-2.2
3,806,231	-		LRK54_RS17415	0.36	-0.6
3,806,231	-		LRK54_RS17415	0.36	-1.7
3,806,231	-		LRK54_RS17415	0.36	-0.2
3,806,231	-		LRK54_RS17415	0.36	-0.8
3,806,231	-		LRK54_RS17415	0.36	+1.4
3,806,231	-		LRK54_RS17415	0.36	-0.9
3,806,231	-		LRK54_RS17415	0.36	+0.4
3,806,231	-		LRK54_RS17415	0.36	-0.6
3,806,231	-		LRK54_RS17415	0.36	-0.6
3,806,231	-		LRK54_RS17415	0.36	+3.4
3,806,231	-		LRK54_RS17415	0.36	+1.1
3,806,231	-		LRK54_RS17415	0.36	-1.6
3,806,231	-		LRK54_RS17415	0.36	+0.4
3,806,231	-		LRK54_RS17415	0.36	-1.0
3,806,231	-		LRK54_RS17415	0.36	-1.2
3,806,231	-		LRK54_RS17415	0.36	-0.6
3,806,231	-		LRK54_RS17415	0.36	+0.0
3,806,425	+		LRK54_RS17415	0.52	+1.4
3,806,425	+		LRK54_RS17415	0.52	-1.6
3,806,425	+		LRK54_RS17415	0.52	-1.0
3,806,425	+		LRK54_RS17415	0.52	+1.4
3,806,426	-		LRK54_RS17415	0.53	+0.1
3,806,426	-		LRK54_RS17415	0.53	-1.0
3,806,426	-		LRK54_RS17415	0.53	-0.2
3,806,431	+		LRK54_RS17415	0.53	+1.0
3,806,431	+		LRK54_RS17415	0.53	-2.0
3,806,432	-		LRK54_RS17415	0.53	+2.4
3,806,432	-		LRK54_RS17415	0.53	+0.8
3,806,432	-		LRK54_RS17415	0.53	-0.5
3,806,432	-		LRK54_RS17415	0.53	+1.9
3,806,432	-		LRK54_RS17415	0.53	-0.1
3,806,432	-		LRK54_RS17415	0.53	+0.6
3,806,432	-		LRK54_RS17415	0.53	-1.5
3,806,632	+		LRK54_RS17415	0.70	+0.4
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	-0.2
3,806,632	+		LRK54_RS17415	0.70	+0.4
3,806,632	+		LRK54_RS17415	0.70	-2.1
3,806,632	+		LRK54_RS17415	0.70	-0.9
3,806,632	+		LRK54_RS17415	0.70	-0.6
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	-1.2
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	-0.2
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	-0.2
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	-0.4
3,806,632	+		LRK54_RS17415	0.70	-1.2
3,806,632	+		LRK54_RS17415	0.70	+1.4
3,806,632	+		LRK54_RS17415	0.70	-0.1
3,806,632	+		LRK54_RS17415	0.70	-1.5
3,806,633	-		LRK54_RS17415	0.70	-0.6
3,806,633	-		LRK54_RS17415	0.70	-0.2
3,806,633	-		LRK54_RS17415	0.70	+1.4
3,806,633	-		LRK54_RS17415	0.70	+0.4
3,806,633	-		LRK54_RS17415	0.70	-0.9
3,806,633	-		LRK54_RS17415	0.70	+2.4
3,806,633	-		LRK54_RS17415	0.70	-0.2
3,806,633	-		LRK54_RS17415	0.70	+1.4
3,806,633	-		LRK54_RS17415	0.70	+0.4
3,806,633	-		LRK54_RS17415	0.70	-0.6
3,806,633	-		LRK54_RS17415	0.70	+1.4
3,806,633	-		LRK54_RS17415	0.70	+0.1
3,806,633	-		LRK54_RS17415	0.70	-2.0
3,806,633	-		LRK54_RS17415	0.70	+1.4
3,806,633	-		LRK54_RS17415	0.70	-0.5
3,806,633	-		LRK54_RS17415	0.70	-0.6
3,806,633	-		LRK54_RS17415	0.70	+0.4
3,806,633	-		LRK54_RS17415	0.70	+0.8
3,806,633	-		LRK54_RS17415	0.70	+2.9
3,806,683	+		LRK54_RS17415	0.74	+0.9
3,806,683	+		LRK54_RS17415	0.74	-1.1
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