Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06565

Experiment: 2E-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2E-T1
1,412,268	+				+0.9
1,412,269	-				-0.7
1,412,269	-				-1.1
1,412,318	+				-0.8
1,412,318	+				+1.9
1,412,319	-				-1.9
1,412,319	-				-0.4
1,412,319	-				-0.4
1,412,354	+				-1.9
1,412,354	+				-0.9
1,412,354	+				+0.9
1,412,354	+				-0.4
1,412,354	+				+0.4
1,412,354	+				-1.4
1,412,354	+				-0.6
1,412,354	+				-0.1
1,412,355	-				-3.0
1,412,355	-				-1.2
1,412,355	-				-2.1
1,412,355	-				-0.6
1,412,355	-				+0.9
1,412,388	+				-1.9
1,412,388	+				-0.8
1,412,388	+				-0.1
1,412,388	+				+0.9
1,412,388	+				-0.6
1,412,388	+				+0.7
1,412,388	+				+1.5
1,412,388	+				+0.6
1,412,388	+				+2.5
1,412,388	+				+1.9
1,412,389	-				-0.9
1,412,389	-				+0.9
1,412,389	-				-0.1
1,412,389	-				+0.4
1,412,389	-				-0.6
1,412,389	-				-0.6
1,412,389	-				-1.9
1,412,389	-				-1.2
1,412,389	-				+0.9
1,412,689	+		LRK54_RS06565	0.55	-0.6
1,412,689	+		LRK54_RS06565	0.55	-2.2
1,412,689	+		LRK54_RS06565	0.55	-0.6
1,412,689	+		LRK54_RS06565	0.55	-0.6
1,412,689	+		LRK54_RS06565	0.55	-1.4
1,412,689	+		LRK54_RS06565	0.55	-1.6
1,412,689	+		LRK54_RS06565	0.55	-1.0
1,412,689	+		LRK54_RS06565	0.55	+1.9
1,412,689	+		LRK54_RS06565	0.55	+0.9
1,412,689	+		LRK54_RS06565	0.55	+0.9
1,412,689	+		LRK54_RS06565	0.55	-0.1
1,412,689	+		LRK54_RS06565	0.55	-0.8
1,412,689	+		LRK54_RS06565	0.55	-0.6
1,412,689	+		LRK54_RS06565	0.55	-0.6
1,412,690	-		LRK54_RS06565	0.55	-1.5
1,412,690	-		LRK54_RS06565	0.55	+0.9
1,412,690	-		LRK54_RS06565	0.55	-0.1
1,412,764	+		LRK54_RS06565	0.72	-2.4
1,412,764	+		LRK54_RS06565	0.72	-1.4
1,412,764	+		LRK54_RS06565	0.72	+0.3
1,412,764	+		LRK54_RS06565	0.72	-3.0
1,412,764	+		LRK54_RS06565	0.72	-0.6
1,412,764	+		LRK54_RS06565	0.72	-0.6
1,412,764	+		LRK54_RS06565	0.72	-1.8
1,412,764	+		LRK54_RS06565	0.72	-1.6
1,412,764	+		LRK54_RS06565	0.72	+0.9
1,412,764	+		LRK54_RS06565	0.72	-2.2
1,412,764	+		LRK54_RS06565	0.72	-0.7
1,412,764	+		LRK54_RS06565	0.72	+0.9
1,412,765	-		LRK54_RS06565	0.72	-1.1
1,412,765	-		LRK54_RS06565	0.72	+0.9
1,412,765	-		LRK54_RS06565	0.72	-1.4
1,412,765	-		LRK54_RS06565	0.72	-0.6
1,412,765	-		LRK54_RS06565	0.72	+0.2
1,412,765	-		LRK54_RS06565	0.72	+0.9
1,412,765	-		LRK54_RS06565	0.72	-1.6
1,412,765	-		LRK54_RS06565	0.72	-1.1
1,412,788	+		LRK54_RS06565	0.78	-2.8
1,412,788	+		LRK54_RS06565	0.78	-0.7
1,412,788	+		LRK54_RS06565	0.78	-1.4
1,412,788	+		LRK54_RS06565	0.78	-1.5
1,412,788	+		LRK54_RS06565	0.78	-0.4
1,412,788	+		LRK54_RS06565	0.78	+1.5
1,412,788	+		LRK54_RS06565	0.78	-2.5
1,412,788	+		LRK54_RS06565	0.78	+0.9
1,412,788	+		LRK54_RS06565	0.78	+1.9
1,412,788	+		LRK54_RS06565	0.78	+1.4
1,412,788	+		LRK54_RS06565	0.78	-0.3
1,412,788	+		LRK54_RS06565	0.78	-0.2
1,412,788	+		LRK54_RS06565	0.78	+0.9
1,412,788	+		LRK54_RS06565	0.78	-0.9
1,412,788	+		LRK54_RS06565	0.78	-1.0
1,412,788	+		LRK54_RS06565	0.78	-1.2
1,412,788	+		LRK54_RS06565	0.78	-0.1
1,412,788	+		LRK54_RS06565	0.78	+0.9
1,412,788	+		LRK54_RS06565	0.78	+0.4
1,412,789	-		LRK54_RS06565	0.78	+0.6
1,412,789	-		LRK54_RS06565	0.78	-2.2
1,412,789	-		LRK54_RS06565	0.78	+0.9
1,412,789	-		LRK54_RS06565	0.78	-0.6
1,412,789	-		LRK54_RS06565	0.78	-0.6
1,412,789	-		LRK54_RS06565	0.78	-1.4
1,412,789	-		LRK54_RS06565	0.78	-0.6
1,412,789	-		LRK54_RS06565	0.78	-0.4
1,412,789	-		LRK54_RS06565	0.78	-1.1
1,412,789	-		LRK54_RS06565	0.78	-0.1
1,412,789	-		LRK54_RS06565	0.78	-0.8
1,412,789	-		LRK54_RS06565	0.78	-0.1
1,412,789	-		LRK54_RS06565	0.78	+0.2
1,412,789	-		LRK54_RS06565	0.78	-0.3
1,412,789	-		LRK54_RS06565	0.78	-1.1
1,412,789	-		LRK54_RS06565	0.78	-0.6
1,412,789	-		LRK54_RS06565	0.78	-1.1
1,412,789	-		LRK54_RS06565	0.78	-0.6
1,412,789	-		LRK54_RS06565	0.78	-0.8
1,412,789	-		LRK54_RS06565	0.78	-1.1
1,412,789	-		LRK54_RS06565	0.78	+0.2
1,412,789	-		LRK54_RS06565	0.78	+0.4
1,412,789	-		LRK54_RS06565	0.78	-0.1
1,412,789	-		LRK54_RS06565	0.78	-1.5
1,412,789	-		LRK54_RS06565	0.78	-0.1
1,412,789	-		LRK54_RS06565	0.78	+0.9
1,412,789	-		LRK54_RS06565	0.78	+0.7
1,412,921	-				+1.9
1,413,007	+				-0.4
1,413,007	+				-0.4
1,413,021	+				-0.5
1,413,021	+				-0.3
1,413,021	+				-1.4
1,413,022	-				-1.1
1,413,022	-				-0.6
1,413,022	-				-0.5
1,413,022	-				+0.9
1,413,022	-				-1.1
1,413,022	-				-0.6
1,413,022	-				-0.2
1,413,022	-				+2.5
1,413,022	-				-2.0
1,413,355	+				-1.1
1,413,355	+				-0.6
1,413,355	+				-0.1
1,413,355	+				-0.1
1,413,355	+				-1.4
1,413,355	+				-1.1
1,413,355	+				-0.1
1,413,355	+				+0.9
1,413,355	+				+0.9
1,413,355	+				-0.1
1,413,356	-				-0.2
1,413,356	-				-0.8
1,413,356	-				-0.9
1,413,356	-				+0.9
1,413,356	-				-1.6
1,413,356	-				-1.4
1,413,356	-				+0.9
1,413,356	-				+0.1
1,413,356	-				-3.1
1,413,356	-				+0.9
1,413,423	+				-0.6
1,413,424	-				-1.1
1,413,424	-				-3.0
1,413,440	+				+0.9
1,413,440	+				-0.1
1,413,440	+				-0.9
1,413,440	+				-0.9
1,413,440	+				-0.5
1,413,440	+				+0.2
1,413,440	+				+0.5
1,413,440	+				+1.5
1,413,440	+				+1.4
1,413,440	+				+0.9
1,413,440	+				+0.7
1,413,440	+				-0.6
1,413,440	+				-1.4
1,413,440	+				+0.2
1,413,441	-				+0.9
1,413,441	-				-1.1
1,413,441	-				+0.0
1,413,441	-				-1.4
1,413,441	-				-2.9
1,413,441	-				-0.6
1,413,441	-				-0.1
1,413,441	-				+0.4
1,413,441	-				+0.9
1,413,441	-				+0.9
1,413,441	-				-2.1
1,413,521	+		LRK54_RS06575	0.17	-2.1
1,413,737	+		LRK54_RS06575	0.51	+0.2
1,413,737	+		LRK54_RS06575	0.51	+0.9
1,413,738	-		LRK54_RS06575	0.51	-1.1
1,413,738	-		LRK54_RS06575	0.51	-0.8
1,413,738	-		LRK54_RS06575	0.51	+0.9
1,413,785	+		LRK54_RS06575	0.59	-1.1
1,413,785	+		LRK54_RS06575	0.59	-1.4
1,413,785	+		LRK54_RS06575	0.59	-0.6
1,413,785	+		LRK54_RS06575	0.59	+0.4
1,413,785	+		LRK54_RS06575	0.59	-1.1
1,413,785	+		LRK54_RS06575	0.59	-0.6
1,413,785	+		LRK54_RS06575	0.59	+0.4
1,413,785	+		LRK54_RS06575	0.59	-0.4
1,413,785	+		LRK54_RS06575	0.59	-1.4
1,413,785	+		LRK54_RS06575	0.59	-1.1
1,413,785	+		LRK54_RS06575	0.59	-0.6
1,413,785	+		LRK54_RS06575	0.59	-0.6
1,413,785	+		LRK54_RS06575	0.59	-1.1
1,413,785	+		LRK54_RS06575	0.59	+0.9
1,413,785	+		LRK54_RS06575	0.59	+0.4
1,413,785	+		LRK54_RS06575	0.59	-0.1
1,413,785	+		LRK54_RS06575	0.59	+0.2
1,413,785	+		LRK54_RS06575	0.59	-1.3
1,413,785	+		LRK54_RS06575	0.59	-0.2
1,413,785	+		LRK54_RS06575	0.59	-0.3
1,413,785	+		LRK54_RS06575	0.59	-0.4
1,413,785	+		LRK54_RS06575	0.59	-2.2
1,413,785	+		LRK54_RS06575	0.59	+0.9
1,413,785	+		LRK54_RS06575	0.59	-0.2
1,413,785	+		LRK54_RS06575	0.59	+0.9
1,413,785	+		LRK54_RS06575	0.59	+0.9
1,413,785	+		LRK54_RS06575	0.59	+0.4
1,413,785	+		LRK54_RS06575	0.59	+0.9
1,413,785	+		LRK54_RS06575	0.59	-0.1
1,413,785	+		LRK54_RS06575	0.59	-0.5
1,413,785	+		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-1.1
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-0.9
1,413,786	-		LRK54_RS06575	0.59	-0.2
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-2.2
1,413,786	-		LRK54_RS06575	0.59	+0.9
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-1.2
1,413,786	-		LRK54_RS06575	0.59	-0.4
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-1.3
1,413,786	-		LRK54_RS06575	0.59	+0.4
1,413,786	-		LRK54_RS06575	0.59	-1.3
1,413,786	-		LRK54_RS06575	0.59	+1.5
1,413,786	-		LRK54_RS06575	0.59	-1.4
1,413,786	-		LRK54_RS06575	0.59	+0.5
1,413,786	-		LRK54_RS06575	0.59	+1.9
1,413,786	-		LRK54_RS06575	0.59	-0.1
1,413,786	-		LRK54_RS06575	0.59	-1.4
1,413,786	-		LRK54_RS06575	0.59	+0.9
1,413,786	-		LRK54_RS06575	0.59	-2.0