Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17085

Experiment: 2B-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2B-T1
3,729,884	+		LRK54_RS17075	0.18	-0.8
3,729,884	+		LRK54_RS17075	0.18	-0.8
3,729,884	+		LRK54_RS17075	0.18	+1.2
3,729,884	+		LRK54_RS17075	0.18	-1.5
3,729,885	-		LRK54_RS17075	0.18	+1.2
3,729,885	-		LRK54_RS17075	0.18	+1.2
3,729,885	-		LRK54_RS17075	0.18	+1.2
3,729,914	+		LRK54_RS17075	0.29	-2.2
3,729,914	+		LRK54_RS17075	0.29	+0.6
3,729,914	+		LRK54_RS17075	0.29	+0.8
3,729,914	+		LRK54_RS17075	0.29	+0.2
3,729,914	+		LRK54_RS17075	0.29	-0.3
3,729,914	+		LRK54_RS17075	0.29	+0.5
3,729,915	-		LRK54_RS17075	0.30	+0.8
3,729,915	-		LRK54_RS17075	0.30	-1.6
3,729,915	-		LRK54_RS17075	0.30	-0.6
3,729,915	-		LRK54_RS17075	0.30	-0.4
3,729,954	+		LRK54_RS17075	0.45	+0.5
3,729,954	+		LRK54_RS17075	0.45	+0.7
3,729,955	-		LRK54_RS17075	0.45	-0.4
3,730,043	+		LRK54_RS17075	0.80	-2.4
3,730,043	+		LRK54_RS17075	0.80	-0.4
3,730,043	+		LRK54_RS17075	0.80	-0.3
3,730,043	+		LRK54_RS17075	0.80	-1.9
3,730,043	+		LRK54_RS17075	0.80	+0.2
3,730,043	+		LRK54_RS17075	0.80	+0.2
3,730,043	+		LRK54_RS17075	0.80	+0.2
3,730,043	+		LRK54_RS17075	0.80	+1.0
3,730,043	+		LRK54_RS17075	0.80	+2.0
3,730,044	-		LRK54_RS17075	0.80	+1.2
3,730,044	-		LRK54_RS17075	0.80	+0.2
3,730,044	-		LRK54_RS17075	0.80	+0.2
3,730,044	-		LRK54_RS17075	0.80	+1.2
3,730,044	-		LRK54_RS17075	0.80	-1.1
3,730,044	-		LRK54_RS17075	0.80	+0.0
3,730,044	-		LRK54_RS17075	0.80	-0.8
3,730,149	+				-0.0
3,730,149	+				+0.2
3,730,149	+				+0.2
3,730,149	+				-0.4
3,730,149	+				-1.6
3,730,149	+				-1.6
3,730,149	+				+0.2
3,730,149	+				+1.2
3,730,149	+				+1.2
3,730,149	+				+0.2
3,730,149	+				+0.6
3,730,149	+				+0.2
3,730,149	+				+2.8
3,730,149	+				-0.8
3,730,149	+				+0.6
3,730,149	+				-0.7
3,730,149	+				+2.8
3,730,149	+				+0.2
3,730,149	+				-0.4
3,730,149	+				-0.1
3,730,149	+				+1.2
3,730,149	+				-0.9
3,730,149	+				-0.4
3,730,149	+				+0.8
3,730,149	+				+1.2
3,730,149	+				-0.8
3,730,149	+				+0.2
3,730,150	-				-1.1
3,730,150	-				-0.4
3,730,150	-				-0.0
3,730,150	-				+1.6
3,730,150	-				+0.9
3,730,150	-				-1.4
3,730,150	-				-0.6
3,730,150	-				+1.2
3,730,150	-				-0.6
3,730,150	-				+2.2
3,730,150	-				+0.2
3,730,150	-				-0.1
3,730,150	-				-0.4
3,730,150	-				+0.2
3,730,150	-				-0.8
3,730,150	-				-0.4
3,730,150	-				-0.5
3,730,150	-				-0.6
3,730,150	-				+0.2
3,730,150	-				-0.1
3,730,150	-				+1.2
3,730,150	-				+1.2
3,730,150	-				+1.6
3,730,150	-				+0.6
3,730,150	-				-0.1
3,730,150	-				+0.2
3,730,150	-				-1.1
3,730,150	-				+0.6
3,730,150	-				-2.8
3,730,150	-				+1.0
3,730,150	-				+2.2
3,730,150	-				-1.2
3,730,150	-				+1.8
3,730,150	-				+1.2
3,730,150	-				+1.2
3,730,177	-				+1.2
3,730,177	-				-0.1
3,730,305	+		LRK54_RS17080	0.45	+0.4
3,730,306	-		LRK54_RS17080	0.45	+1.2
3,730,306	-		LRK54_RS17080	0.45	+0.6
3,730,306	-		LRK54_RS17080	0.45	+2.2
3,730,306	-		LRK54_RS17080	0.45	-0.2
3,730,529	+				+0.1
3,730,529	+				-1.1
3,730,529	+				-0.4
3,730,529	+				+1.2
3,730,529	+				+0.2
3,730,529	+				-2.1
3,730,529	+				+1.2
3,730,529	+				+0.2
3,730,529	+				-0.4
3,730,529	+				-0.5
3,730,529	+				+0.2
3,730,529	+				+0.5
3,730,529	+				+1.2
3,730,529	+				-0.6
3,730,529	+				-0.8
3,730,529	+				-1.4
3,730,529	+				+2.8
3,730,529	+				-0.8
3,730,529	+				+1.2
3,730,529	+				+1.8
3,730,529	+				+0.2
3,730,529	+				+1.2
3,730,529	+				+1.2
3,730,529	+				+1.2
3,730,529	+				-0.8
3,730,529	+				+0.6
3,730,529	+				-0.1
3,730,529	+				-1.1
3,730,529	+				-0.8
3,730,529	+				-1.8
3,730,529	+				+1.2
3,730,530	-				+0.6
3,730,530	-				-0.1
3,730,530	-				+0.2
3,730,530	-				-1.1
3,730,530	-				+0.2
3,730,530	-				+1.2
3,730,530	-				-0.4
3,730,530	-				+1.2
3,730,530	-				-1.9
3,730,530	-				-0.1
3,730,530	-				+1.2
3,730,530	-				-0.8
3,730,530	-				-0.8
3,730,530	-				+1.2
3,730,530	-				+0.2
3,730,530	-				+0.4
3,730,530	-				-1.2
3,730,530	-				+0.2
3,730,530	-				-0.1
3,730,530	-				-0.8
3,730,530	-				-1.1
3,730,530	-				-0.6
3,730,530	-				+0.1
3,730,530	-				-0.4
3,730,530	-				+0.2
3,730,530	-				+1.8
3,730,530	-				+1.2
3,730,530	-				+0.2
3,730,530	-				-1.3
3,730,530	-				+1.2
3,730,530	-				+1.2
3,730,530	-				-0.4
3,730,530	-				+0.4
3,730,532	+				+0.8
3,730,533	-				-0.0
3,730,570	+				+1.8
3,730,570	+				+0.9
3,730,570	+				-0.2
3,730,570	+				+0.5
3,730,570	+				-1.1
3,730,570	+				-1.7
3,730,570	+				+0.2
3,730,570	+				+0.2
3,730,571	-				-2.1
3,730,571	-				+0.8
3,730,571	-				+1.8
3,730,576	+				+1.2
3,730,577	-				+0.5
3,730,577	-				+0.2
3,730,577	-				-0.4
3,730,577	-				+0.2
3,730,682	+				-0.8
3,730,682	+				-1.1
3,730,682	+				-0.9
3,730,682	+				-0.4
3,730,682	+				-1.9
3,730,683	-				+0.5
3,730,683	-				+0.6
3,730,683	-				+0.2
3,730,683	-				-1.8
3,730,683	-				-1.6
3,730,683	-				+1.2
3,730,739	-				+1.2
3,730,854	+				-1.1
3,730,854	+				-0.8
3,730,854	+				+0.8
3,730,854	+				+1.2
3,730,855	-		LRK54_RS17085	0.10	+0.2
3,730,855	-		LRK54_RS17085	0.10	+1.2
3,730,855	-		LRK54_RS17085	0.10	-0.8
3,730,855	-		LRK54_RS17085	0.10	-1.6
3,730,855	-		LRK54_RS17085	0.10	-0.8
3,730,855	-		LRK54_RS17085	0.10	-0.8
3,730,911	+		LRK54_RS17085	0.22	+0.2
3,730,911	+		LRK54_RS17085	0.22	+1.2
3,730,911	+		LRK54_RS17085	0.22	+0.6
3,730,911	+		LRK54_RS17085	0.22	+0.2
3,730,911	+		LRK54_RS17085	0.22	-0.7
3,730,911	+		LRK54_RS17085	0.22	-0.4
3,730,911	+		LRK54_RS17085	0.22	-0.4
3,730,912	-		LRK54_RS17085	0.22	-0.2
3,730,953	+		LRK54_RS17085	0.30	+2.8
3,730,953	+		LRK54_RS17085	0.30	+0.8
3,730,953	+		LRK54_RS17085	0.30	-0.6
3,730,953	+		LRK54_RS17085	0.30	+2.2
3,730,953	+		LRK54_RS17085	0.30	-0.6
3,730,953	+		LRK54_RS17085	0.30	+1.2
3,730,953	+		LRK54_RS17085	0.30	+1.2
3,730,954	-		LRK54_RS17085	0.30	+1.2
3,730,954	-		LRK54_RS17085	0.30	+0.5
3,730,954	-		LRK54_RS17085	0.30	-0.6
3,730,954	-		LRK54_RS17085	0.30	-1.6
3,730,954	-		LRK54_RS17085	0.30	-0.8
3,730,954	-		LRK54_RS17085	0.30	+3.2
3,730,954	-		LRK54_RS17085	0.30	+1.2
3,731,064	+		LRK54_RS17085	0.53	+0.2
3,731,064	+		LRK54_RS17085	0.53	-0.5
3,731,064	+		LRK54_RS17085	0.53	+1.2
3,731,064	+		LRK54_RS17085	0.53	+0.2
3,731,064	+		LRK54_RS17085	0.53	+0.2
3,731,064	+		LRK54_RS17085	0.53	-1.2
3,731,064	+		LRK54_RS17085	0.53	+0.2
3,731,065	-		LRK54_RS17085	0.53	-0.4
3,731,065	-		LRK54_RS17085	0.53	-1.5
3,731,065	-		LRK54_RS17085	0.53	+1.2
3,731,065	-		LRK54_RS17085	0.53	-1.4
3,731,065	-		LRK54_RS17085	0.53	-0.9
3,731,065	-		LRK54_RS17085	0.53	-0.7
3,731,065	-		LRK54_RS17085	0.53	+0.2
3,731,065	-		LRK54_RS17085	0.53	+1.2
3,731,311	+				-0.5
3,731,311	+				-0.4
3,731,311	+				+0.2
3,731,312	-				+2.2
3,731,312	-				-0.4
3,731,312	-				-1.4
3,731,312	-				+0.2
3,731,325	+				-0.8
3,731,325	+				-2.1
3,731,325	+				-0.1
3,731,325	+				+0.2
3,731,326	-				+0.2
3,731,326	-				-1.8
3,731,326	-				+1.2
3,731,326	-				-0.4
3,731,326	-				+0.2
3,731,326	-				+0.6
3,731,326	-				+0.9
3,731,326	-				-0.4
3,731,326	-				-0.3
3,731,326	-				-0.8
3,731,326	-				+0.2
3,731,330	+				+0.1
3,731,330	+				+0.2
3,731,330	+				-0.5
3,731,330	+				-1.1
3,731,330	+				+0.2
3,731,330	+				-0.7
3,731,330	+				-1.6
3,731,330	+				-0.9
3,731,330	+				+0.0
3,731,331	-				+0.7
3,731,331	-				-1.1
3,731,331	-				+0.7
3,731,331	-				-2.2
3,731,576	+				+0.6
3,731,576	+				+1.2
3,731,576	+				+0.4
3,731,576	+				-0.4
3,731,576	+				+0.2
3,731,576	+				-0.4
3,731,576	+				-0.4
3,731,577	-				+0.6
3,731,577	-				-1.2
3,731,577	-				+0.2
3,731,577	-				-0.4
3,731,577	-				-0.4
3,731,577	-				-0.2
3,731,577	-				+0.2
3,731,577	-				-0.8
3,731,577	-				-0.4
3,731,577	-				-0.4
3,731,593	+				+0.2
3,731,593	+				+0.8
3,731,594	-				-1.1
3,731,671	+				-0.8
3,731,672	-				+0.2
3,732,007	+		LRK54_RS17090	0.71	+0.6
3,732,007	+		LRK54_RS17090	0.71	-0.8
3,732,007	+		LRK54_RS17090	0.71	+1.2
3,732,007	+		LRK54_RS17090	0.71	+1.2
3,732,007	+		LRK54_RS17090	0.71	-1.8
3,732,007	+		LRK54_RS17090	0.71	-1.9
3,732,007	+		LRK54_RS17090	0.71	+0.5
3,732,007	+		LRK54_RS17090	0.71	+0.5
3,732,008	-		LRK54_RS17090	0.71	+1.2
3,732,008	-		LRK54_RS17090	0.71	-0.6
3,732,008	-		LRK54_RS17090	0.71	-0.4
3,732,008	-		LRK54_RS17090	0.71	-0.9
3,732,008	-		LRK54_RS17090	0.71	-1.4
3,732,008	-		LRK54_RS17090	0.71	+0.5
3,732,064	+		LRK54_RS17090	0.82	-0.4
3,732,090	+		LRK54_RS17090	0.87	+0.8
3,732,090	+		LRK54_RS17090	0.87	-2.4