Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05315

Experiment: 2B-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2B-T1
1,141,410	+		LRK54_RS05310	0.56	-0.1
1,141,411	-		LRK54_RS05310	0.56	-2.4
1,141,411	-		LRK54_RS05310	0.56	-1.5
1,141,701	+		LRK54_RS05310	0.85	+0.3
1,141,701	+		LRK54_RS05310	0.85	-0.7
1,141,701	+		LRK54_RS05310	0.85	-1.4
1,141,701	+		LRK54_RS05310	0.85	-1.1
1,141,701	+		LRK54_RS05310	0.85	-2.1
1,141,701	+		LRK54_RS05310	0.85	-1.4
1,141,701	+		LRK54_RS05310	0.85	-1.7
1,141,702	-		LRK54_RS05310	0.85	-3.8
1,141,702	-		LRK54_RS05310	0.85	-1.1
1,141,702	-		LRK54_RS05310	0.85	-3.4
1,141,702	-		LRK54_RS05310	0.85	-2.5
1,141,702	-		LRK54_RS05310	0.85	-3.5
1,141,702	-		LRK54_RS05310	0.85	-1.7
1,141,702	-		LRK54_RS05310	0.85	-1.6
1,141,734	+		LRK54_RS05310	0.88	-1.5
1,141,734	+		LRK54_RS05310	0.88	-2.3
1,141,893	-				-1.5
1,142,114	+				+0.3
1,142,120	+				-2.5
1,142,120	+				-1.1
1,142,121	-				+0.4
1,142,121	-				+0.5
1,142,122	+				-0.5
1,142,122	+				+0.3
1,142,122	+				-0.3
1,142,122	+				-0.1
1,142,122	+				-0.4
1,142,122	+				+0.9
1,142,122	+				-0.5
1,142,124	+				+0.6
1,142,124	+				-0.1
1,142,124	+				+1.9
1,142,125	-				-2.5
1,142,125	-				-1.1
1,142,125	-				-1.0
1,142,125	-				+0.9
1,142,125	-				-1.1
1,142,131	-				+0.2
1,142,614	+		LRK54_RS05315	0.37	-1.1
1,142,614	+		LRK54_RS05315	0.37	-0.5
1,142,890	+		LRK54_RS05315	0.64	-0.9
1,142,890	+		LRK54_RS05315	0.64	+0.9
1,142,890	+		LRK54_RS05315	0.64	+0.7
1,142,890	+		LRK54_RS05315	0.64	-0.5
1,142,890	+		LRK54_RS05315	0.64	+1.9
1,142,890	+		LRK54_RS05315	0.64	-0.1
1,142,890	+		LRK54_RS05315	0.64	-1.4
1,142,890	+		LRK54_RS05315	0.64	+1.9
1,142,890	+		LRK54_RS05315	0.64	-1.1
1,142,890	+		LRK54_RS05315	0.64	+0.1
1,142,891	-		LRK54_RS05315	0.64	-0.1
1,142,891	-		LRK54_RS05315	0.64	+1.3
1,142,891	-		LRK54_RS05315	0.64	-0.1
1,142,891	-		LRK54_RS05315	0.64	-0.4
1,142,891	-		LRK54_RS05315	0.64	+0.9
1,143,253	+				+1.7
1,143,253	+				+0.7
1,143,254	-				-0.3
1,143,254	-				+0.3
1,143,286	+				-1.4
1,143,286	+				+0.3
1,143,286	+				+0.3
1,143,286	+				+0.3
1,143,286	+				+0.0
1,143,286	+				-0.7
1,143,286	+				-0.4
1,143,332	+				+0.9
1,143,332	+				+0.2
1,143,332	+				+0.4
1,143,332	+				-0.4
1,143,332	+				-1.1
1,143,332	+				+0.1
1,143,332	+				+1.8
1,143,333	-				+0.9
1,143,418	+				-0.4
1,143,589	+		LRK54_RS05320	0.22	+0.9
1,143,589	+		LRK54_RS05320	0.22	-0.7
1,143,589	+		LRK54_RS05320	0.22	+0.2
1,143,589	+		LRK54_RS05320	0.22	-0.7
1,143,589	+		LRK54_RS05320	0.22	-0.1
1,143,589	+		LRK54_RS05320	0.22	+0.9
1,143,589	+		LRK54_RS05320	0.22	+0.3
1,143,589	+		LRK54_RS05320	0.22	+0.1
1,143,589	+		LRK54_RS05320	0.22	+0.9
1,143,589	+		LRK54_RS05320	0.22	-1.1
1,143,589	+		LRK54_RS05320	0.22	-0.1
1,143,589	+		LRK54_RS05320	0.22	+1.1
1,143,589	+		LRK54_RS05320	0.22	-0.4
1,143,589	+		LRK54_RS05320	0.22	-0.1
1,143,590	-		LRK54_RS05320	0.22	+0.2
1,143,590	-		LRK54_RS05320	0.22	+0.1
1,143,590	-		LRK54_RS05320	0.22	+0.9
1,143,590	-		LRK54_RS05320	0.22	+0.3
1,143,590	-		LRK54_RS05320	0.22	+0.2
1,143,590	-		LRK54_RS05320	0.22	-1.1
1,143,590	-		LRK54_RS05320	0.22	-0.4
1,143,590	-		LRK54_RS05320	0.22	+0.5
1,143,590	-		LRK54_RS05320	0.22	+0.9
1,143,590	-		LRK54_RS05320	0.22	-1.2
1,143,590	-		LRK54_RS05320	0.22	+0.9
1,143,590	-		LRK54_RS05320	0.22	-0.1
1,143,590	-		LRK54_RS05320	0.22	-1.5
1,143,590	-		LRK54_RS05320	0.22	+1.9
1,143,590	-		LRK54_RS05320	0.22	-0.7
1,143,590	-		LRK54_RS05320	0.22	-1.0
1,143,685	+		LRK54_RS05320	0.35	-0.3
1,143,685	+		LRK54_RS05320	0.35	+0.9
1,143,685	+		LRK54_RS05320	0.35	-0.1
1,143,685	+		LRK54_RS05320	0.35	+0.9
1,143,685	+		LRK54_RS05320	0.35	-0.7
1,143,685	+		LRK54_RS05320	0.35	+0.2
1,143,686	-		LRK54_RS05320	0.35	-1.4
1,143,686	-		LRK54_RS05320	0.35	+2.7
1,143,700	+		LRK54_RS05320	0.37	+0.6
1,143,700	+		LRK54_RS05320	0.37	-0.1
1,143,700	+		LRK54_RS05320	0.37	+0.9
1,143,700	+		LRK54_RS05320	0.37	+0.9
1,143,700	+		LRK54_RS05320	0.37	-0.7
1,143,700	+		LRK54_RS05320	0.37	-0.1
1,143,700	+		LRK54_RS05320	0.37	+0.9
1,143,700	+		LRK54_RS05320	0.37	-0.9
1,143,700	+		LRK54_RS05320	0.37	-0.1
1,143,701	-		LRK54_RS05320	0.37	-0.4
1,143,701	-		LRK54_RS05320	0.37	-1.1
1,143,701	-		LRK54_RS05320	0.37	-0.3
1,143,701	-		LRK54_RS05320	0.37	-0.2
1,143,701	-		LRK54_RS05320	0.37	+2.2
1,143,701	-		LRK54_RS05320	0.37	-1.4
1,143,928	+		LRK54_RS05320	0.69	+1.9
1,143,928	+		LRK54_RS05320	0.69	-0.2
1,143,929	-		LRK54_RS05320	0.69	-0.9
1,143,929	-		LRK54_RS05320	0.69	+0.9
1,144,130	+				-0.6
1,144,130	+				+0.9
1,144,130	+				-1.4
1,144,130	+				-0.1
1,144,131	-				-0.3
1,144,131	-				+0.9
1,144,131	-				+0.2
1,144,131	-				-0.5
1,144,184	+				+0.2
1,144,184	+				+0.9
1,144,184	+				+0.1
1,144,184	+				+0.6
1,144,184	+				-0.5
1,144,185	-				+0.9
1,144,185	-				+0.6
1,144,185	-				+0.5
1,144,185	-				-1.1
1,144,185	-				-0.1
1,144,208	+				-0.1
1,144,209	-				+0.3