Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05165

Experiment: 2B-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2B-T1
1,108,708	+		LRK54_RS05160	0.32	-0.4
1,108,708	+		LRK54_RS05160	0.32	-0.8
1,108,708	+		LRK54_RS05160	0.32	+0.9
1,108,708	+		LRK54_RS05160	0.32	-1.1
1,108,708	+		LRK54_RS05160	0.32	-1.0
1,108,708	+		LRK54_RS05160	0.32	+0.9
1,108,709	-		LRK54_RS05160	0.32	+0.5
1,108,709	-		LRK54_RS05160	0.32	-0.9
1,108,709	-		LRK54_RS05160	0.32	+0.3
1,108,709	-		LRK54_RS05160	0.32	+0.9
1,108,709	-		LRK54_RS05160	0.32	-0.4
1,108,709	-		LRK54_RS05160	0.32	-0.1
1,108,783	+		LRK54_RS05160	0.38	-1.1
1,108,783	+		LRK54_RS05160	0.38	+3.5
1,108,783	+		LRK54_RS05160	0.38	-0.1
1,108,784	-		LRK54_RS05160	0.38	-1.9
1,108,784	-		LRK54_RS05160	0.38	-0.5
1,108,784	-		LRK54_RS05160	0.38	+0.9
1,108,784	-		LRK54_RS05160	0.38	+0.9
1,108,784	-		LRK54_RS05160	0.38	+0.9
1,108,801	+		LRK54_RS05160	0.40	-0.6
1,108,801	+		LRK54_RS05160	0.40	+0.9
1,108,801	+		LRK54_RS05160	0.40	-1.4
1,108,801	+		LRK54_RS05160	0.40	+0.2
1,108,801	+		LRK54_RS05160	0.40	+0.9
1,108,801	+		LRK54_RS05160	0.40	+0.1
1,108,802	-		LRK54_RS05160	0.40	-0.2
1,108,802	-		LRK54_RS05160	0.40	-0.7
1,108,802	-		LRK54_RS05160	0.40	+1.3
1,108,802	-		LRK54_RS05160	0.40	-0.4
1,108,802	-		LRK54_RS05160	0.40	-1.3
1,109,041	+		LRK54_RS05160	0.60	+0.9
1,109,041	+		LRK54_RS05160	0.60	+0.5
1,109,041	+		LRK54_RS05160	0.60	+0.3
1,109,042	-		LRK54_RS05160	0.61	-1.1
1,109,042	-		LRK54_RS05160	0.61	-0.1
1,109,042	-		LRK54_RS05160	0.61	-0.3
1,109,243	-		LRK54_RS05160	0.78	-1.7
1,109,243	-		LRK54_RS05160	0.78	-2.2
1,109,243	-		LRK54_RS05160	0.78	-0.3
1,109,359	+		LRK54_RS05160	0.88	-0.1
1,109,359	+		LRK54_RS05160	0.88	+0.9
1,109,359	+		LRK54_RS05160	0.88	+0.3
1,109,359	+		LRK54_RS05160	0.88	-0.8
1,109,359	+		LRK54_RS05160	0.88	-1.1
1,109,359	+		LRK54_RS05160	0.88	+1.3
1,109,359	+		LRK54_RS05160	0.88	+0.9
1,109,359	+		LRK54_RS05160	0.88	-0.4
1,109,359	+		LRK54_RS05160	0.88	+0.9
1,109,359	+		LRK54_RS05160	0.88	-0.7
1,109,359	+		LRK54_RS05160	0.88	+0.6
1,109,359	+		LRK54_RS05160	0.88	-0.5
1,109,359	+		LRK54_RS05160	0.88	+0.2
1,109,359	+		LRK54_RS05160	0.88	-0.1
1,109,359	+		LRK54_RS05160	0.88	+0.1
1,109,359	+		LRK54_RS05160	0.88	+0.3
1,109,359	+		LRK54_RS05160	0.88	-0.4
1,109,359	+		LRK54_RS05160	0.88	-0.9
1,109,359	+		LRK54_RS05160	0.88	-0.1
1,109,360	-		LRK54_RS05160	0.88	+0.9
1,109,360	-		LRK54_RS05160	0.88	+0.5
1,109,360	-		LRK54_RS05160	0.88	+1.9
1,109,360	-		LRK54_RS05160	0.88	-0.1
1,109,360	-		LRK54_RS05160	0.88	+0.3
1,109,360	-		LRK54_RS05160	0.88	+1.9
1,109,360	-		LRK54_RS05160	0.88	-0.4
1,109,360	-		LRK54_RS05160	0.88	-0.1
1,109,360	-		LRK54_RS05160	0.88	+0.1
1,109,360	-		LRK54_RS05160	0.88	-0.5
1,109,360	-		LRK54_RS05160	0.88	-1.1
1,109,360	-		LRK54_RS05160	0.88	+0.9
1,109,360	-		LRK54_RS05160	0.88	-0.1
1,109,360	-		LRK54_RS05160	0.88	+0.2
1,109,514	+				-0.3
1,109,514	+				-1.1
1,109,515	-				+0.9
1,109,547	+				-1.3
1,109,547	+				+0.3
1,109,547	+				-1.1
1,109,547	+				-0.4
1,109,547	+				-1.4
1,109,547	+				-1.2
1,109,548	-				-1.1
1,109,548	-				+1.7
1,109,548	-				+0.0
1,109,548	-				+1.9
1,109,548	-				+1.9
1,109,548	-				+0.9
1,109,619	+		LRK54_RS05165	0.13	-0.9
1,109,620	-		LRK54_RS05165	0.13	-0.9
1,109,620	-		LRK54_RS05165	0.13	+0.9
1,109,634	+		LRK54_RS05165	0.15	+0.3
1,109,634	+		LRK54_RS05165	0.15	-1.4
1,109,634	+		LRK54_RS05165	0.15	+0.5
1,109,634	+		LRK54_RS05165	0.15	+0.4
1,109,634	+		LRK54_RS05165	0.15	-0.1
1,109,634	+		LRK54_RS05165	0.15	-0.1
1,109,634	+		LRK54_RS05165	0.15	-0.2
1,109,634	+		LRK54_RS05165	0.15	-0.7
1,109,634	+		LRK54_RS05165	0.15	+0.9
1,109,634	+		LRK54_RS05165	0.15	+1.5
1,109,634	+		LRK54_RS05165	0.15	-1.1
1,109,634	+		LRK54_RS05165	0.15	+0.9
1,109,634	+		LRK54_RS05165	0.15	+0.0
1,109,634	+		LRK54_RS05165	0.15	-0.1
1,109,635	-		LRK54_RS05165	0.15	+0.2
1,109,635	-		LRK54_RS05165	0.15	+1.9
1,109,635	-		LRK54_RS05165	0.15	-0.7
1,109,635	-		LRK54_RS05165	0.15	-0.3
1,109,635	-		LRK54_RS05165	0.15	+1.9
1,109,635	-		LRK54_RS05165	0.15	-2.1
1,109,635	-		LRK54_RS05165	0.15	-0.8
1,109,635	-		LRK54_RS05165	0.15	-0.5
1,109,635	-		LRK54_RS05165	0.15	-0.1
1,109,709	+		LRK54_RS05165	0.23	-0.2
1,109,709	+		LRK54_RS05165	0.23	-0.7
1,109,709	+		LRK54_RS05165	0.23	-0.1
1,109,709	+		LRK54_RS05165	0.23	+0.3
1,109,709	+		LRK54_RS05165	0.23	-0.5
1,109,710	-		LRK54_RS05165	0.23	-0.8
1,109,710	-		LRK54_RS05165	0.23	-0.6
1,109,710	-		LRK54_RS05165	0.23	+0.3
1,109,717	-		LRK54_RS05165	0.23	+0.3
1,109,739	+		LRK54_RS05165	0.26	-0.1
1,109,740	-		LRK54_RS05165	0.26	-0.7
1,109,740	-		LRK54_RS05165	0.26	-0.1
1,109,825	+		LRK54_RS05165	0.35	-2.8
1,109,825	+		LRK54_RS05165	0.35	+1.2
1,109,825	+		LRK54_RS05165	0.35	-0.7
1,109,825	+		LRK54_RS05165	0.35	-0.1
1,109,825	+		LRK54_RS05165	0.35	-2.2
1,109,825	+		LRK54_RS05165	0.35	-1.4
1,109,825	+		LRK54_RS05165	0.35	-0.4
1,109,826	-		LRK54_RS05165	0.35	+0.9
1,109,826	-		LRK54_RS05165	0.35	-0.7
1,109,826	-		LRK54_RS05165	0.35	+0.9
1,109,826	-		LRK54_RS05165	0.35	-0.1
1,109,826	-		LRK54_RS05165	0.35	-1.1
1,109,826	-		LRK54_RS05165	0.35	-0.1
1,109,826	-		LRK54_RS05165	0.35	+0.9
1,109,826	-		LRK54_RS05165	0.35	-0.1
1,109,826	-		LRK54_RS05165	0.35	-0.6
1,109,826	-		LRK54_RS05165	0.35	+0.9
1,109,826	-		LRK54_RS05165	0.35	-1.6
1,109,826	-		LRK54_RS05165	0.35	+0.9
1,109,826	-		LRK54_RS05165	0.35	-1.9
1,109,826	-		LRK54_RS05165	0.35	+0.9
1,110,052	-		LRK54_RS05165	0.59	-0.4
1,110,102	+		LRK54_RS05165	0.65	-0.0
1,110,102	+		LRK54_RS05165	0.65	-1.7
1,110,102	+		LRK54_RS05165	0.65	-0.1
1,110,102	+		LRK54_RS05165	0.65	+0.9
1,110,102	+		LRK54_RS05165	0.65	+1.1
1,110,102	+		LRK54_RS05165	0.65	-2.2
1,110,103	-		LRK54_RS05165	0.65	-1.1
1,110,103	-		LRK54_RS05165	0.65	-1.2
1,110,103	-		LRK54_RS05165	0.65	+0.9
1,110,103	-		LRK54_RS05165	0.65	+0.3
1,110,103	-		LRK54_RS05165	0.65	+0.9
1,110,132	+		LRK54_RS05165	0.68	+0.0
1,110,132	+		LRK54_RS05165	0.68	+0.9
1,110,133	-		LRK54_RS05165	0.68	+0.1
1,110,207	+		LRK54_RS05165	0.76	-0.7
1,110,207	+		LRK54_RS05165	0.76	+0.2
1,110,207	+		LRK54_RS05165	0.76	-0.1
1,110,207	+		LRK54_RS05165	0.76	-1.2
1,110,207	+		LRK54_RS05165	0.76	+2.2
1,110,207	+		LRK54_RS05165	0.76	+0.5
1,110,208	-		LRK54_RS05165	0.76	+0.9
1,110,208	-		LRK54_RS05165	0.76	+0.9
1,110,208	-		LRK54_RS05165	0.76	-0.5
1,110,208	-		LRK54_RS05165	0.76	+2.5
1,110,208	-		LRK54_RS05165	0.76	-0.5
1,110,324	+		LRK54_RS05165	0.89	+1.7
1,110,324	+		LRK54_RS05165	0.89	-1.7
1,110,324	+		LRK54_RS05165	0.89	-0.7
1,110,324	+		LRK54_RS05165	0.89	+0.3
1,110,325	-		LRK54_RS05165	0.89	-0.7
1,110,325	-		LRK54_RS05165	0.89	+0.3
1,110,325	-		LRK54_RS05165	0.89	+0.9
1,110,325	-		LRK54_RS05165	0.89	-0.7
1,110,325	-		LRK54_RS05165	0.89	+1.5
1,110,325	-		LRK54_RS05165	0.89	-2.2
1,110,333	+		LRK54_RS05165	0.89	-0.1
1,110,334	-		LRK54_RS05165	0.90	+0.7
1,110,334	-		LRK54_RS05165	0.90	-2.1
1,110,411	+				-0.4
1,110,412	-				-0.4
1,110,412	-				+0.9
1,110,419	-				+0.2
1,110,505	+				-0.7
1,110,505	+				+0.6
1,110,506	-				-1.2
1,110,506	-				-1.0
1,110,506	-				+0.3
1,110,655	+		LRK54_RS05170	0.25	-0.9
1,110,655	+		LRK54_RS05170	0.25	-0.7
1,110,656	-		LRK54_RS05170	0.25	-0.1
1,110,656	-		LRK54_RS05170	0.25	+1.9
1,110,656	-		LRK54_RS05170	0.25	+1.3
1,110,685	+		LRK54_RS05170	0.28	+0.9
1,110,685	+		LRK54_RS05170	0.28	-0.7
1,110,685	+		LRK54_RS05170	0.28	+0.9
1,110,685	+		LRK54_RS05170	0.28	+0.9
1,110,685	+		LRK54_RS05170	0.28	+0.9
1,110,685	+		LRK54_RS05170	0.28	-0.1
1,110,685	+		LRK54_RS05170	0.28	+1.5
1,110,685	+		LRK54_RS05170	0.28	+0.4
1,110,685	+		LRK54_RS05170	0.28	-1.9
1,110,685	+		LRK54_RS05170	0.28	-0.8
1,110,685	+		LRK54_RS05170	0.28	+0.9
1,110,685	+		LRK54_RS05170	0.28	-1.7
1,110,685	+		LRK54_RS05170	0.28	-0.1
1,110,686	-		LRK54_RS05170	0.28	+0.9
1,110,686	-		LRK54_RS05170	0.28	+0.3
1,110,686	-		LRK54_RS05170	0.28	+0.9
1,110,686	-		LRK54_RS05170	0.28	+0.9
1,110,686	-		LRK54_RS05170	0.28	-0.7
1,110,686	-		LRK54_RS05170	0.28	-0.7
1,110,686	-		LRK54_RS05170	0.28	-0.1
1,110,686	-		LRK54_RS05170	0.28	+0.5
1,110,686	-		LRK54_RS05170	0.28	-0.1
1,110,686	-		LRK54_RS05170	0.28	-0.7
1,110,686	-		LRK54_RS05170	0.28	+0.1
1,110,686	-		LRK54_RS05170	0.28	-0.5
1,110,686	-		LRK54_RS05170	0.28	+0.2
1,110,686	-		LRK54_RS05170	0.28	+0.1
1,110,686	-		LRK54_RS05170	0.28	+0.4
1,110,686	-		LRK54_RS05170	0.28	-1.6
1,110,686	-		LRK54_RS05170	0.28	-0.7
1,110,686	-		LRK54_RS05170	0.28	-0.1
1,110,694	+		LRK54_RS05170	0.29	-0.5
1,110,694	+		LRK54_RS05170	0.29	+2.5
1,110,694	+		LRK54_RS05170	0.29	-0.4
1,110,695	-		LRK54_RS05170	0.29	+0.3
1,110,695	-		LRK54_RS05170	0.29	+0.9
1,110,695	-		LRK54_RS05170	0.29	-0.3
1,110,695	-		LRK54_RS05170	0.29	-0.3
1,110,736	+		LRK54_RS05170	0.33	-2.2
1,110,871	+		LRK54_RS05170	0.48	+0.9
1,110,872	-		LRK54_RS05170	0.48	+0.1
1,110,872	-		LRK54_RS05170	0.48	+1.7
1,110,872	-		LRK54_RS05170	0.48	+1.5
1,111,057	+		LRK54_RS05170	0.67	+0.9
1,111,057	+		LRK54_RS05170	0.67	-0.9
1,111,057	+		LRK54_RS05170	0.67	+0.4
1,111,057	+		LRK54_RS05170	0.67	-1.7
1,111,057	+		LRK54_RS05170	0.67	-1.1
1,111,057	+		LRK54_RS05170	0.67	+0.9
1,111,057	+		LRK54_RS05170	0.67	+0.9
1,111,057	+		LRK54_RS05170	0.67	+0.9
1,111,057	+		LRK54_RS05170	0.67	-0.1
1,111,057	+		LRK54_RS05170	0.67	+0.2
1,111,057	+		LRK54_RS05170	0.67	-0.9
1,111,057	+		LRK54_RS05170	0.67	-1.7
1,111,057	+		LRK54_RS05170	0.67	-1.4
1,111,057	+		LRK54_RS05170	0.67	-2.4
1,111,057	+		LRK54_RS05170	0.67	+0.9
1,111,057	+		LRK54_RS05170	0.67	-0.1
1,111,057	+		LRK54_RS05170	0.67	-0.1
1,111,058	-		LRK54_RS05170	0.67	-0.7
1,111,058	-		LRK54_RS05170	0.67	-0.7
1,111,058	-		LRK54_RS05170	0.67	+1.9
1,111,058	-		LRK54_RS05170	0.67	-0.7
1,111,058	-		LRK54_RS05170	0.67	+0.9
1,111,058	-		LRK54_RS05170	0.67	+0.9
1,111,058	-		LRK54_RS05170	0.67	+1.9
1,111,058	-		LRK54_RS05170	0.67	+1.7
1,111,058	-		LRK54_RS05170	0.67	+0.9
1,111,058	-		LRK54_RS05170	0.67	-1.2
1,111,058	-		LRK54_RS05170	0.67	-0.7
1,111,058	-		LRK54_RS05170	0.67	-0.2
1,111,204	+		LRK54_RS05170	0.82	+0.9
1,111,204	+		LRK54_RS05170	0.82	+1.9
1,111,204	+		LRK54_RS05170	0.82	-0.1
1,111,204	+		LRK54_RS05170	0.82	+0.3
1,111,204	+		LRK54_RS05170	0.82	+0.9
1,111,204	+		LRK54_RS05170	0.82	+0.2
1,111,204	+		LRK54_RS05170	0.82	-0.1
1,111,205	-		LRK54_RS05170	0.83	+0.9
1,111,205	-		LRK54_RS05170	0.83	-0.4
1,111,205	-		LRK54_RS05170	0.83	-1.4
1,111,205	-		LRK54_RS05170	0.83	+0.9
1,111,247	-		LRK54_RS05170	0.87	+1.9
1,111,341	+				+0.9
1,111,342	-				-0.4
1,111,342	-				-0.7
1,111,342	-				+0.9