Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07630

Experiment: 2A-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2A-T1
1,644,789	+				-0.1
1,644,917	+				+0.6
1,644,917	+				-0.4
1,644,917	+				-0.8
1,644,917	+				-0.8
1,644,917	+				-0.1
1,644,917	+				+0.4
1,644,917	+				-0.9
1,644,918	-				-1.1
1,644,918	-				-0.4
1,644,918	-				+0.9
1,644,918	-				+0.6
1,644,918	-				+2.1
1,644,928	+				-0.4
1,645,018	-				+0.9
1,645,018	-				+0.6
1,645,018	-				-1.4
1,645,018	-				+0.6
1,645,018	-				-0.2
1,645,018	-				-0.0
1,645,018	-				+0.6
1,645,018	-				-2.0
1,645,018	-				+1.6
1,645,045	+				+1.2
1,645,045	+				-0.4
1,645,046	-				-0.2
1,645,046	-				+0.6
1,645,046	-				-0.3
1,645,046	-				-1.4
1,645,252	-				-0.4
1,645,252	-				-1.0
1,645,258	+				+0.6
1,645,258	+				+1.6
1,645,258	+				-0.7
1,645,258	+				-0.4
1,645,259	-				-1.4
1,645,259	-				-1.0
1,645,318	+				+0.2
1,645,318	+				-0.4
1,645,319	-				-0.3
1,645,320	-				-1.0
1,645,751	+		LRK54_RS07630	0.19	+1.6
1,645,751	+		LRK54_RS07630	0.19	+0.7
1,645,751	+		LRK54_RS07630	0.19	+0.6
1,645,751	+		LRK54_RS07630	0.19	+1.0
1,645,752	-		LRK54_RS07630	0.19	-1.8
1,645,752	-		LRK54_RS07630	0.19	-0.0
1,645,752	-		LRK54_RS07630	0.19	+0.6
1,645,752	-		LRK54_RS07630	0.19	-1.0
1,645,752	-		LRK54_RS07630	0.19	+0.6
1,646,012	-		LRK54_RS07630	0.30	+1.1
1,646,012	-		LRK54_RS07630	0.30	+1.6
1,646,107	+		LRK54_RS07630	0.34	+0.3
1,646,107	+		LRK54_RS07630	0.34	-0.3
1,646,107	+		LRK54_RS07630	0.34	-0.6
1,646,108	-		LRK54_RS07630	0.34	+0.6
1,646,108	-		LRK54_RS07630	0.34	-0.4
1,646,108	-		LRK54_RS07630	0.34	+1.1
1,646,269	+		LRK54_RS07630	0.41	+0.3
1,646,269	+		LRK54_RS07630	0.41	+1.6
1,646,269	+		LRK54_RS07630	0.41	-1.1
1,646,269	+		LRK54_RS07630	0.41	-0.5
1,646,269	+		LRK54_RS07630	0.41	-1.4
1,646,270	-		LRK54_RS07630	0.41	+0.6
1,646,270	-		LRK54_RS07630	0.41	-0.0
1,646,270	-		LRK54_RS07630	0.41	-0.4
1,646,270	-		LRK54_RS07630	0.41	-0.0
1,646,270	-		LRK54_RS07630	0.41	-0.7
1,646,311	+		LRK54_RS07630	0.43	-0.4
1,646,312	-		LRK54_RS07630	0.43	-0.8
1,646,312	-		LRK54_RS07630	0.43	+0.1
1,646,312	-		LRK54_RS07630	0.43	+1.3
1,646,312	-		LRK54_RS07630	0.43	-0.7
1,646,312	-		LRK54_RS07630	0.43	+0.6
1,646,447	+		LRK54_RS07630	0.49	+0.2
1,646,448	-		LRK54_RS07630	0.49	-0.0
1,646,545	+		LRK54_RS07630	0.53	-0.4
1,646,545	+		LRK54_RS07630	0.53	+0.6
1,646,545	+		LRK54_RS07630	0.53	+0.3
1,646,546	-		LRK54_RS07630	0.53	+0.1
1,646,546	-		LRK54_RS07630	0.53	+0.6
1,646,620	+		LRK54_RS07630	0.57	-0.0
1,646,677	+		LRK54_RS07630	0.59	-0.6
1,646,677	+		LRK54_RS07630	0.59	-0.8
1,646,677	+		LRK54_RS07630	0.59	-0.0
1,646,678	-		LRK54_RS07630	0.59	-1.4
1,646,678	-		LRK54_RS07630	0.59	-1.0
1,646,678	-		LRK54_RS07630	0.59	-1.8
1,646,678	-		LRK54_RS07630	0.59	+1.1
1,646,719	+		LRK54_RS07630	0.61	-0.6
1,646,719	+		LRK54_RS07630	0.61	-0.1
1,646,719	+		LRK54_RS07630	0.61	-1.0
1,646,719	+		LRK54_RS07630	0.61	+0.6
1,646,719	+		LRK54_RS07630	0.61	+1.2
1,646,719	+		LRK54_RS07630	0.61	-1.1
1,646,719	+		LRK54_RS07630	0.61	+0.6
1,646,720	-		LRK54_RS07630	0.61	-0.1
1,646,720	-		LRK54_RS07630	0.61	-0.7
1,646,720	-		LRK54_RS07630	0.61	-1.4
1,646,720	-		LRK54_RS07630	0.61	+1.1
1,646,720	-		LRK54_RS07630	0.61	-0.4
1,646,720	-		LRK54_RS07630	0.61	-0.9
1,646,720	-		LRK54_RS07630	0.61	+0.6
1,646,720	-		LRK54_RS07630	0.61	+0.6
1,646,720	-		LRK54_RS07630	0.61	-1.0
1,646,720	-		LRK54_RS07630	0.61	+0.9
1,646,720	-		LRK54_RS07630	0.61	+0.6
1,646,720	-		LRK54_RS07630	0.61	+0.6
1,646,794	+		LRK54_RS07630	0.64	-1.0
1,646,794	+		LRK54_RS07630	0.64	-0.2
1,646,795	-		LRK54_RS07630	0.64	+1.0
1,646,795	-		LRK54_RS07630	0.64	-0.3
1,646,795	-		LRK54_RS07630	0.64	-1.0
1,647,075	+		LRK54_RS07630	0.76	-0.4
1,647,075	+		LRK54_RS07630	0.76	-0.8
1,647,130	+		LRK54_RS07630	0.79	-1.0
1,647,130	+		LRK54_RS07630	0.79	-0.0
1,647,131	-		LRK54_RS07630	0.79	+1.6
1,647,131	-		LRK54_RS07630	0.79	+0.6
1,647,190	+		LRK54_RS07630	0.81	-0.8
1,647,190	+		LRK54_RS07630	0.81	+1.6
1,647,190	+		LRK54_RS07630	0.81	-0.9
1,647,190	+		LRK54_RS07630	0.81	-1.0
1,647,190	+		LRK54_RS07630	0.81	-0.4
1,647,190	+		LRK54_RS07630	0.81	-1.0
1,647,191	-		LRK54_RS07630	0.81	-0.2
1,647,191	-		LRK54_RS07630	0.81	-0.3
1,647,191	-		LRK54_RS07630	0.81	-1.8
1,647,191	-		LRK54_RS07630	0.81	+1.6
1,647,191	-		LRK54_RS07630	0.81	-0.4
1,647,191	-		LRK54_RS07630	0.81	-0.2
1,647,191	-		LRK54_RS07630	0.81	-1.5
1,647,191	-		LRK54_RS07630	0.81	-0.3
1,647,191	-		LRK54_RS07630	0.81	+1.0
1,647,191	-		LRK54_RS07630	0.81	-0.4
1,647,403	+				+1.1
1,647,404	-				-0.9
1,647,404	-				+0.6
1,647,421	+				-0.6
1,647,421	+				-1.4
1,647,421	+				-2.3
1,647,421	+				+1.1
1,647,421	+				-0.4
1,647,421	+				-0.2
1,647,422	-				+1.0
1,647,422	-				+0.6
1,647,422	-				-0.6
1,647,422	-				-0.6
1,647,422	-				+0.2
1,647,422	-				-0.8
1,647,422	-				+1.6
1,647,422	-				+0.2
1,647,422	-				-0.9
1,647,442	+				-0.6
1,647,442	+				+0.6
1,647,442	+				-0.4
1,647,442	+				-0.8
1,647,443	-				-1.0
1,647,616	-				-2.4
1,647,659	+				-1.6
1,647,659	+				-0.5
1,647,660	-				+0.0
1,647,660	-				-0.0
1,647,660	-				-1.0
1,647,660	-				+0.6
1,647,789	+		LRK54_RS07635	0.14	+1.1
1,647,789	+		LRK54_RS07635	0.14	-0.6
1,647,790	-		LRK54_RS07635	0.14	-0.6
1,647,790	-		LRK54_RS07635	0.14	-0.4
1,647,790	-		LRK54_RS07635	0.14	-0.4
1,647,798	+		LRK54_RS07635	0.16	+0.6
1,647,814	-		LRK54_RS07635	0.19	+0.6
1,647,823	-		LRK54_RS07635	0.20	-2.6
1,647,887	+		LRK54_RS07635	0.32	-0.0
1,647,888	-		LRK54_RS07635	0.32	-0.4
1,647,904	+		LRK54_RS07635	0.35	+1.6
1,647,905	-		LRK54_RS07635	0.35	+0.6
1,647,950	+		LRK54_RS07635	0.43	+1.6
1,647,950	+		LRK54_RS07635	0.43	-1.4
1,647,950	+		LRK54_RS07635	0.43	-0.4
1,647,950	+		LRK54_RS07635	0.43	+0.6
1,647,950	+		LRK54_RS07635	0.43	-1.2
1,647,950	+		LRK54_RS07635	0.43	-1.0
1,647,950	+		LRK54_RS07635	0.43	-1.0
1,647,950	+		LRK54_RS07635	0.43	-1.9
1,647,950	+		LRK54_RS07635	0.43	-0.4
1,647,950	+		LRK54_RS07635	0.43	+0.6
1,647,950	+		LRK54_RS07635	0.43	-1.0
1,647,950	+		LRK54_RS07635	0.43	-1.8
1,647,951	-		LRK54_RS07635	0.44	-1.4
1,647,951	-		LRK54_RS07635	0.44	-0.4
1,647,951	-		LRK54_RS07635	0.44	+0.6
1,647,951	-		LRK54_RS07635	0.44	-0.3
1,647,951	-		LRK54_RS07635	0.44	-0.4
1,647,951	-		LRK54_RS07635	0.44	-1.4
1,647,951	-		LRK54_RS07635	0.44	-1.4
1,647,951	-		LRK54_RS07635	0.44	-0.4
1,647,951	-		LRK54_RS07635	0.44	-1.0
1,647,951	-		LRK54_RS07635	0.44	-1.0
1,647,951	-		LRK54_RS07635	0.44	-1.5
1,647,972	+		LRK54_RS07635	0.47	+0.6
1,647,972	+		LRK54_RS07635	0.47	-0.8
1,647,972	+		LRK54_RS07635	0.47	-0.4
1,647,972	+		LRK54_RS07635	0.47	+0.6
1,647,973	-		LRK54_RS07635	0.48	+1.6
1,648,011	+		LRK54_RS07635	0.55	-0.4
1,648,011	+		LRK54_RS07635	0.55	-0.8
1,648,012	-		LRK54_RS07635	0.55	+0.3
1,648,051	+		LRK54_RS07635	0.62	-1.0
1,648,062	+		LRK54_RS07635	0.64	-0.0
1,648,062	+		LRK54_RS07635	0.64	-0.2
1,648,062	+		LRK54_RS07635	0.64	-0.6
1,648,062	+		LRK54_RS07635	0.64	-0.4
1,648,062	+		LRK54_RS07635	0.64	-2.8
1,648,062	+		LRK54_RS07635	0.64	-0.4
1,648,062	+		LRK54_RS07635	0.64	-1.4
1,648,063	-		LRK54_RS07635	0.64	-0.6
1,648,063	-		LRK54_RS07635	0.64	-1.0
1,648,068	+		LRK54_RS07635	0.65	+2.1
1,648,069	-		LRK54_RS07635	0.65	-1.4
1,648,074	+		LRK54_RS07635	0.66	-0.4
1,648,075	-		LRK54_RS07635	0.66	-1.4
1,648,075	-		LRK54_RS07635	0.66	-0.3
1,648,075	-		LRK54_RS07635	0.66	-0.6
1,648,075	-		LRK54_RS07635	0.66	+1.3
1,648,075	-		LRK54_RS07635	0.66	-1.2
1,648,075	-		LRK54_RS07635	0.66	-0.4
1,648,075	-		LRK54_RS07635	0.66	-1.9
1,648,075	-		LRK54_RS07635	0.66	-1.0
1,648,078	+		LRK54_RS07635	0.67	+0.6
1,648,079	-		LRK54_RS07635	0.67	+1.9
1,648,079	-		LRK54_RS07635	0.67	+0.9
1,648,119	+		LRK54_RS07635	0.74	-1.6
1,648,119	+		LRK54_RS07635	0.74	-0.4
1,648,120	-		LRK54_RS07635	0.74	+0.6
1,648,167	+		LRK54_RS07635	0.83	+0.6
1,648,167	+		LRK54_RS07635	0.83	+1.6
1,648,168	-		LRK54_RS07635	0.83	+0.3
1,648,168	-		LRK54_RS07635	0.83	+0.6
1,648,168	-		LRK54_RS07635	0.83	-0.7
1,648,255	+				-0.0
1,648,358	+				-1.4
1,648,358	+				+1.6
1,648,358	+				-0.4
1,648,358	+				+0.6
1,648,358	+				-0.9
1,648,358	+				-0.4
1,648,358	+				-1.0
1,648,358	+				-0.0
1,648,358	+				-0.7
1,648,358	+				+0.6
1,648,358	+				-2.1
1,648,358	+				-0.4
1,648,359	-				+0.6
1,648,359	-				+0.4
1,648,359	-				+0.1
1,648,359	-				+1.3
1,648,359	-				-0.7
1,648,359	-				-1.3
1,648,391	+				-0.4
1,648,391	+				-1.0
1,648,391	+				-1.8
1,648,391	+				-0.1
1,648,391	+				-0.7
1,648,391	+				+0.6
1,648,391	+				-2.0
1,648,391	+				+0.8
1,648,392	-				+0.1
1,648,392	-				-1.6
1,648,392	-				+1.6
1,648,392	-				-0.3
1,648,392	-				+0.6
1,648,392	-				+0.3
1,648,392	-				+0.6
1,648,392	-				-1.0
1,648,421	+				+0.6
1,648,421	+				-0.9
1,648,421	+				-0.4
1,648,421	+				+0.2
1,648,421	+				+0.6
1,648,421	+				-0.8
1,648,421	+				+1.6
1,648,421	+				+0.6
1,648,422	-				+1.6
1,648,422	-				-0.7
1,648,422	-				+0.6
1,648,422	-				-1.0
1,648,422	-				-0.3
1,648,484	+				+1.0
1,648,485	-				-1.4