Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05240

Experiment: 2A-T1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS05230 and LRK54_RS05235 overlap by 4 nucleotidesLRK54_RS05235 and LRK54_RS05240 overlap by 4 nucleotidesLRK54_RS05240 and LRK54_RS05245 are separated by 10 nucleotides LRK54_RS05230: LRK54_RS05230 - YceI family protein, at 1,122,392 to 1,123,009 _RS05230 LRK54_RS05235: LRK54_RS05235 - cytochrome b, at 1,123,006 to 1,123,587 _RS05235 LRK54_RS05240: LRK54_RS05240 - YceI family protein, at 1,123,584 to 1,124,129 _RS05240 LRK54_RS05245: LRK54_RS05245 - GTP-binding protein, at 1,124,140 to 1,125,498 _RS05245 Position (kb) 1123 1124 1125Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1122.707 kb on + strand, within LRK54_RS05230at 1122.707 kb on + strand, within LRK54_RS05230at 1122.708 kb on - strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.842 kb on + strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.843 kb on - strand, within LRK54_RS05230at 1122.858 kb on + strand, within LRK54_RS05230at 1122.859 kb on - strand, within LRK54_RS05230at 1122.859 kb on - strand, within LRK54_RS05230at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.291 kb on + strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.292 kb on - strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.438 kb on + strand, within LRK54_RS05235at 1123.644 kb on + strand, within LRK54_RS05240at 1123.644 kb on + strand, within LRK54_RS05240at 1123.644 kb on + strand, within LRK54_RS05240at 1123.645 kb on - strand, within LRK54_RS05240at 1123.645 kb on - strand, within LRK54_RS05240at 1123.645 kb on - strand, within LRK54_RS05240at 1123.645 kb on - strand, within LRK54_RS05240at 1123.645 kb on - strand, within LRK54_RS05240at 1123.743 kb on + strand, within LRK54_RS05240at 1123.743 kb on + strand, within LRK54_RS05240at 1123.743 kb on + strand, within LRK54_RS05240at 1123.743 kb on + strand, within LRK54_RS05240at 1123.744 kb on - strand, within LRK54_RS05240at 1124.061 kb on + strand, within LRK54_RS05240at 1124.061 kb on + strand, within LRK54_RS05240at 1124.061 kb on + strand, within LRK54_RS05240at 1124.062 kb on - strand, within LRK54_RS05240at 1124.062 kb on - strand, within LRK54_RS05240at 1124.127 kb on + strandat 1124.127 kb on + strandat 1124.128 kb on - strandat 1124.128 kb on - strandat 1124.128 kb on - strandat 1124.128 kb on - strandat 1124.128 kb on - strandat 1124.262 kb on - strandat 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.037 kb on + strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245at 1125.038 kb on - strand, within LRK54_RS05245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2A-T1
remove
1,122,707 + LRK54_RS05230 0.51 -0.1
1,122,707 + LRK54_RS05230 0.51 +0.9
1,122,708 - LRK54_RS05230 0.51 -0.7
1,122,842 + LRK54_RS05230 0.73 +0.5
1,122,842 + LRK54_RS05230 0.73 -0.1
1,122,842 + LRK54_RS05230 0.73 -1.7
1,122,842 + LRK54_RS05230 0.73 -0.6
1,122,842 + LRK54_RS05230 0.73 +2.5
1,122,842 + LRK54_RS05230 0.73 +0.9
1,122,842 + LRK54_RS05230 0.73 +1.2
1,122,842 + LRK54_RS05230 0.73 -0.3
1,122,842 + LRK54_RS05230 0.73 +0.1
1,122,842 + LRK54_RS05230 0.73 -0.7
1,122,842 + LRK54_RS05230 0.73 +0.9
1,122,842 + LRK54_RS05230 0.73 -0.4
1,122,842 + LRK54_RS05230 0.73 +1.9
1,122,843 - LRK54_RS05230 0.73 -1.0
1,122,843 - LRK54_RS05230 0.73 -0.7
1,122,843 - LRK54_RS05230 0.73 -2.1
1,122,843 - LRK54_RS05230 0.73 -0.7
1,122,843 - LRK54_RS05230 0.73 +0.9
1,122,843 - LRK54_RS05230 0.73 +0.9
1,122,843 - LRK54_RS05230 0.73 -0.3
1,122,843 - LRK54_RS05230 0.73 +0.1
1,122,843 - LRK54_RS05230 0.73 +1.9
1,122,843 - LRK54_RS05230 0.73 -0.7
1,122,843 - LRK54_RS05230 0.73 -1.0
1,122,843 - LRK54_RS05230 0.73 -0.5
1,122,843 - LRK54_RS05230 0.73 -1.1
1,122,843 - LRK54_RS05230 0.73 +1.9
1,122,843 - LRK54_RS05230 0.73 -1.7
1,122,843 - LRK54_RS05230 0.73 -0.1
1,122,858 + LRK54_RS05230 0.75 -1.4
1,122,859 - LRK54_RS05230 0.76 -0.4
1,122,859 - LRK54_RS05230 0.76 -1.0
1,123,291 + LRK54_RS05235 0.49 +0.9
1,123,291 + LRK54_RS05235 0.49 +0.2
1,123,291 + LRK54_RS05235 0.49 -0.9
1,123,291 + LRK54_RS05235 0.49 +0.9
1,123,291 + LRK54_RS05235 0.49 -0.1
1,123,291 + LRK54_RS05235 0.49 +1.9
1,123,291 + LRK54_RS05235 0.49 -0.3
1,123,291 + LRK54_RS05235 0.49 +1.2
1,123,291 + LRK54_RS05235 0.49 +1.6
1,123,291 + LRK54_RS05235 0.49 -0.1
1,123,291 + LRK54_RS05235 0.49 +1.3
1,123,291 + LRK54_RS05235 0.49 -0.7
1,123,291 + LRK54_RS05235 0.49 +2.9
1,123,291 + LRK54_RS05235 0.49 -0.1
1,123,292 - LRK54_RS05235 0.49 -1.1
1,123,292 - LRK54_RS05235 0.49 -0.7
1,123,292 - LRK54_RS05235 0.49 -0.5
1,123,292 - LRK54_RS05235 0.49 -1.3
1,123,292 - LRK54_RS05235 0.49 -0.0
1,123,292 - LRK54_RS05235 0.49 -2.3
1,123,292 - LRK54_RS05235 0.49 +0.5
1,123,292 - LRK54_RS05235 0.49 -0.1
1,123,292 - LRK54_RS05235 0.49 +0.9
1,123,438 + LRK54_RS05235 0.74 -0.1
1,123,438 + LRK54_RS05235 0.74 -0.4
1,123,438 + LRK54_RS05235 0.74 -1.1
1,123,438 + LRK54_RS05235 0.74 -0.1
1,123,438 + LRK54_RS05235 0.74 -0.8
1,123,438 + LRK54_RS05235 0.74 -0.7
1,123,438 + LRK54_RS05235 0.74 -1.5
1,123,644 + LRK54_RS05240 0.11 +0.4
1,123,644 + LRK54_RS05240 0.11 -0.7
1,123,644 + LRK54_RS05240 0.11 +1.5
1,123,645 - LRK54_RS05240 0.11 -1.1
1,123,645 - LRK54_RS05240 0.11 +0.5
1,123,645 - LRK54_RS05240 0.11 -1.5
1,123,645 - LRK54_RS05240 0.11 -0.1
1,123,645 - LRK54_RS05240 0.11 +0.2
1,123,743 + LRK54_RS05240 0.29 -1.9
1,123,743 + LRK54_RS05240 0.29 -0.1
1,123,743 + LRK54_RS05240 0.29 +0.9
1,123,743 + LRK54_RS05240 0.29 -0.1
1,123,744 - LRK54_RS05240 0.29 -0.1
1,124,061 + LRK54_RS05240 0.87 -0.1
1,124,061 + LRK54_RS05240 0.87 -0.1
1,124,061 + LRK54_RS05240 0.87 +0.1
1,124,062 - LRK54_RS05240 0.88 -1.8
1,124,062 - LRK54_RS05240 0.88 -0.1
1,124,127 + -0.3
1,124,127 + +0.2
1,124,128 - +1.9
1,124,128 - -1.1
1,124,128 - -0.1
1,124,128 - -1.5
1,124,128 - +1.9
1,124,262 - -1.1
1,125,037 + LRK54_RS05245 0.66 +1.3
1,125,037 + LRK54_RS05245 0.66 -0.3
1,125,037 + LRK54_RS05245 0.66 +0.9
1,125,037 + LRK54_RS05245 0.66 -0.5
1,125,037 + LRK54_RS05245 0.66 -0.4
1,125,037 + LRK54_RS05245 0.66 -0.4
1,125,037 + LRK54_RS05245 0.66 -0.7
1,125,037 + LRK54_RS05245 0.66 +0.1
1,125,037 + LRK54_RS05245 0.66 -0.8
1,125,037 + LRK54_RS05245 0.66 -0.6
1,125,037 + LRK54_RS05245 0.66 +0.5
1,125,037 + LRK54_RS05245 0.66 -0.7
1,125,037 + LRK54_RS05245 0.66 +0.6
1,125,037 + LRK54_RS05245 0.66 -1.0
1,125,037 + LRK54_RS05245 0.66 +0.5
1,125,037 + LRK54_RS05245 0.66 +0.9
1,125,037 + LRK54_RS05245 0.66 +1.5
1,125,037 + LRK54_RS05245 0.66 -0.7
1,125,037 + LRK54_RS05245 0.66 -0.4
1,125,037 + LRK54_RS05245 0.66 -1.1
1,125,037 + LRK54_RS05245 0.66 +0.5
1,125,038 - LRK54_RS05245 0.66 +0.5
1,125,038 - LRK54_RS05245 0.66 -1.1
1,125,038 - LRK54_RS05245 0.66 -1.1
1,125,038 - LRK54_RS05245 0.66 -1.5
1,125,038 - LRK54_RS05245 0.66 -0.1
1,125,038 - LRK54_RS05245 0.66 +0.9
1,125,038 - LRK54_RS05245 0.66 -0.7
1,125,038 - LRK54_RS05245 0.66 -0.1
1,125,038 - LRK54_RS05245 0.66 -1.1
1,125,038 - LRK54_RS05245 0.66 +0.6
1,125,038 - LRK54_RS05245 0.66 -1.0
1,125,038 - LRK54_RS05245 0.66 +0.9
1,125,038 - LRK54_RS05245 0.66 -1.9

Or see this region's nucleotide sequence