Experiment: 2A-T1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02680 and LRK54_RS02685 overlap by 17 nucleotides LRK54_RS02685 and LRK54_RS02690 overlap by 4 nucleotides LRK54_RS02690 and LRK54_RS02695 are separated by 21 nucleotides LRK54_RS02695 and LRK54_RS02700 are separated by 14 nucleotides LRK54_RS02700 and LRK54_RS02705 are separated by 106 nucleotides
LRK54_RS02680: LRK54_RS02680 - CPBP family intramembrane metalloprotease, at 576,317 to 577,144
_RS02680
LRK54_RS02685: LRK54_RS02685 - Maf family nucleotide pyrophosphatase, at 577,128 to 577,715
_RS02685
LRK54_RS02690: LRK54_RS02690 - GNAT family N-acetyltransferase, at 577,712 to 578,161
_RS02690
LRK54_RS02695: LRK54_RS02695 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 578,183 to 578,653
_RS02695
LRK54_RS02700: LRK54_RS02700 - ribosome silencing factor, at 578,668 to 579,054
_RS02700
LRK54_RS02705: LRK54_RS02705 - nitronate monooxygenase, at 579,161 to 580,228
_RS02705
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.986 kb on + strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.987 kb on - strand, within LRK54_RS02680 at 576.995 kb on + strand, within LRK54_RS02680 at 576.995 kb on + strand, within LRK54_RS02680 at 576.995 kb on + strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 576.996 kb on - strand, within LRK54_RS02680 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.204 kb on + strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.205 kb on - strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.255 kb on + strand, within LRK54_RS02685 at 577.256 kb on - strand, within LRK54_RS02685 at 577.256 kb on - strand, within LRK54_RS02685 at 577.256 kb on - strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.294 kb on + strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.295 kb on - strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.582 kb on + strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.583 kb on - strand, within LRK54_RS02685 at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.699 kb on + strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.700 kb on - strand at 577.728 kb on + strand at 577.728 kb on + strand at 577.728 kb on + strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.729 kb on - strand at 577.743 kb on + strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.744 kb on - strand at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.770 kb on + strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.771 kb on - strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.959 kb on + strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 577.960 kb on - strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.082 kb on + strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.083 kb on - strand, within LRK54_RS02690 at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.196 kb on + strand at 578.197 kb on - strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.229 kb on + strand at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.230 kb on - strand, within LRK54_RS02695 at 578.586 kb on + strand, within LRK54_RS02695 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.735 kb on + strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 578.736 kb on - strand, within LRK54_RS02700 at 579.016 kb on - strand at 579.039 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.104 kb on + strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.106 kb on + strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand at 579.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2A-T1 remove 576,986 + LRK54_RS02680 0.81 -0.1 576,986 + LRK54_RS02680 0.81 +1.2 576,986 + LRK54_RS02680 0.81 +2.2 576,986 + LRK54_RS02680 0.81 -0.4 576,986 + LRK54_RS02680 0.81 +1.2 576,986 + LRK54_RS02680 0.81 +2.2 576,986 + LRK54_RS02680 0.81 -1.1 576,986 + LRK54_RS02680 0.81 +1.2 576,986 + LRK54_RS02680 0.81 +1.2 576,986 + LRK54_RS02680 0.81 -0.1 576,986 + LRK54_RS02680 0.81 -0.6 576,986 + LRK54_RS02680 0.81 +1.2 576,987 - LRK54_RS02680 0.81 -1.1 576,987 - LRK54_RS02680 0.81 +0.2 576,987 - LRK54_RS02680 0.81 -1.4 576,987 - LRK54_RS02680 0.81 -1.1 576,987 - LRK54_RS02680 0.81 -1.4 576,987 - LRK54_RS02680 0.81 -1.5 576,995 + LRK54_RS02680 0.82 -0.1 576,995 + LRK54_RS02680 0.82 +1.5 576,995 + LRK54_RS02680 0.82 +0.2 576,996 - LRK54_RS02680 0.82 +1.2 576,996 - LRK54_RS02680 0.82 +0.2 576,996 - LRK54_RS02680 0.82 -0.2 576,996 - LRK54_RS02680 0.82 +1.2 576,996 - LRK54_RS02680 0.82 +2.2 577,204 + LRK54_RS02685 0.13 +0.6 577,204 + LRK54_RS02685 0.13 +0.2 577,204 + LRK54_RS02685 0.13 +1.2 577,204 + LRK54_RS02685 0.13 -0.4 577,204 + LRK54_RS02685 0.13 +0.4 577,204 + LRK54_RS02685 0.13 +0.2 577,204 + LRK54_RS02685 0.13 -0.4 577,204 + LRK54_RS02685 0.13 -2.1 577,204 + LRK54_RS02685 0.13 -0.8 577,204 + LRK54_RS02685 0.13 -0.3 577,204 + LRK54_RS02685 0.13 +1.2 577,204 + LRK54_RS02685 0.13 +2.2 577,204 + LRK54_RS02685 0.13 +0.2 577,205 - LRK54_RS02685 0.13 +1.2 577,205 - LRK54_RS02685 0.13 -0.3 577,205 - LRK54_RS02685 0.13 -1.8 577,205 - LRK54_RS02685 0.13 +0.2 577,205 - LRK54_RS02685 0.13 +1.2 577,205 - LRK54_RS02685 0.13 +1.2 577,205 - LRK54_RS02685 0.13 -0.4 577,205 - LRK54_RS02685 0.13 +1.2 577,205 - LRK54_RS02685 0.13 -0.1 577,205 - LRK54_RS02685 0.13 -0.4 577,205 - LRK54_RS02685 0.13 +1.2 577,205 - LRK54_RS02685 0.13 -0.8 577,205 - LRK54_RS02685 0.13 -0.4 577,205 - LRK54_RS02685 0.13 +0.2 577,205 - LRK54_RS02685 0.13 -1.7 577,205 - LRK54_RS02685 0.13 -2.0 577,205 - LRK54_RS02685 0.13 +1.0 577,205 - LRK54_RS02685 0.13 -1.1 577,205 - LRK54_RS02685 0.13 -0.8 577,255 + LRK54_RS02685 0.22 +0.8 577,255 + LRK54_RS02685 0.22 +2.2 577,255 + LRK54_RS02685 0.22 +0.1 577,255 + LRK54_RS02685 0.22 +0.2 577,255 + LRK54_RS02685 0.22 +0.2 577,256 - LRK54_RS02685 0.22 +0.2 577,256 - LRK54_RS02685 0.22 -0.2 577,256 - LRK54_RS02685 0.22 -1.5 577,294 + LRK54_RS02685 0.28 -0.4 577,294 + LRK54_RS02685 0.28 +1.2 577,294 + LRK54_RS02685 0.28 +0.9 577,294 + LRK54_RS02685 0.28 -1.6 577,294 + LRK54_RS02685 0.28 -0.6 577,294 + LRK54_RS02685 0.28 -0.8 577,294 + LRK54_RS02685 0.28 -1.0 577,294 + LRK54_RS02685 0.28 -0.8 577,294 + LRK54_RS02685 0.28 +0.2 577,294 + LRK54_RS02685 0.28 +1.2 577,294 + LRK54_RS02685 0.28 +1.6 577,295 - LRK54_RS02685 0.28 -1.1 577,295 - LRK54_RS02685 0.28 -0.4 577,295 - LRK54_RS02685 0.28 -1.1 577,295 - LRK54_RS02685 0.28 +1.2 577,295 - LRK54_RS02685 0.28 -1.4 577,295 - LRK54_RS02685 0.28 -0.1 577,295 - LRK54_RS02685 0.28 +0.6 577,295 - LRK54_RS02685 0.28 -0.3 577,295 - LRK54_RS02685 0.28 +0.9 577,295 - LRK54_RS02685 0.28 -1.4 577,295 - LRK54_RS02685 0.28 +0.8 577,582 + LRK54_RS02685 0.77 -1.8 577,582 + LRK54_RS02685 0.77 +0.2 577,582 + LRK54_RS02685 0.77 +1.2 577,582 + LRK54_RS02685 0.77 +0.4 577,583 - LRK54_RS02685 0.77 -0.8 577,583 - LRK54_RS02685 0.77 +1.2 577,583 - LRK54_RS02685 0.77 -0.6 577,583 - LRK54_RS02685 0.77 +0.2 577,583 - LRK54_RS02685 0.77 +0.2 577,583 - LRK54_RS02685 0.77 +1.2 577,583 - LRK54_RS02685 0.77 -0.8 577,583 - LRK54_RS02685 0.77 +0.8 577,583 - LRK54_RS02685 0.77 -2.4 577,699 + +0.8 577,699 + -0.6 577,699 + -0.4 577,699 + -1.7 577,699 + -0.1 577,699 + -0.4 577,700 - -0.7 577,700 - -0.2 577,700 - +0.2 577,700 - -0.1 577,700 - -1.4 577,700 - -0.4 577,700 - +2.2 577,700 - -0.5 577,728 + +2.2 577,728 + +0.2 577,728 + +1.2 577,729 - -0.1 577,729 - +0.3 577,729 - +0.9 577,729 - +0.9 577,729 - -0.8 577,743 + +0.6 577,744 - +1.2 577,744 - +0.2 577,744 - +0.1 577,744 - -0.1 577,744 - -0.8 577,770 + LRK54_RS02690 0.13 +1.2 577,770 + LRK54_RS02690 0.13 -0.8 577,770 + LRK54_RS02690 0.13 +1.2 577,770 + LRK54_RS02690 0.13 -0.8 577,771 - LRK54_RS02690 0.13 +0.2 577,771 - LRK54_RS02690 0.13 -0.8 577,771 - LRK54_RS02690 0.13 +0.6 577,771 - LRK54_RS02690 0.13 +2.8 577,771 - LRK54_RS02690 0.13 +1.2 577,959 + LRK54_RS02690 0.55 +1.2 577,959 + LRK54_RS02690 0.55 -1.4 577,959 + LRK54_RS02690 0.55 +1.2 577,960 - LRK54_RS02690 0.55 -0.4 577,960 - LRK54_RS02690 0.55 +1.2 577,960 - LRK54_RS02690 0.55 +1.2 577,960 - LRK54_RS02690 0.55 -0.6 577,960 - LRK54_RS02690 0.55 +0.2 577,960 - LRK54_RS02690 0.55 +1.2 578,082 + LRK54_RS02690 0.82 -2.1 578,082 + LRK54_RS02690 0.82 -0.4 578,082 + LRK54_RS02690 0.82 +0.2 578,082 + LRK54_RS02690 0.82 +0.4 578,083 - LRK54_RS02690 0.82 +0.9 578,083 - LRK54_RS02690 0.82 -0.3 578,083 - LRK54_RS02690 0.82 +0.3 578,083 - LRK54_RS02690 0.82 +1.2 578,083 - LRK54_RS02690 0.82 -1.4 578,083 - LRK54_RS02690 0.82 -1.1 578,196 + -0.3 578,196 + -2.0 578,196 + -1.8 578,196 + -0.8 578,196 + +0.4 578,196 + +2.2 578,197 - +0.5 578,229 + -0.4 578,229 + +0.2 578,229 + -0.8 578,229 + -0.4 578,229 + -1.4 578,229 + +1.2 578,230 - LRK54_RS02695 0.10 +2.2 578,230 - LRK54_RS02695 0.10 +0.2 578,230 - LRK54_RS02695 0.10 -1.4 578,230 - LRK54_RS02695 0.10 -0.8 578,230 - LRK54_RS02695 0.10 +0.2 578,230 - LRK54_RS02695 0.10 -0.8 578,230 - LRK54_RS02695 0.10 +0.5 578,586 + LRK54_RS02695 0.86 -1.6 578,735 + LRK54_RS02700 0.17 +1.2 578,735 + LRK54_RS02700 0.17 -0.1 578,735 + LRK54_RS02700 0.17 -0.7 578,735 + LRK54_RS02700 0.17 -0.5 578,736 - LRK54_RS02700 0.18 -0.4 578,736 - LRK54_RS02700 0.18 -1.9 578,736 - LRK54_RS02700 0.18 -0.3 578,736 - LRK54_RS02700 0.18 -1.1 578,736 - LRK54_RS02700 0.18 +0.6 578,736 - LRK54_RS02700 0.18 -1.5 578,736 - LRK54_RS02700 0.18 -1.1 578,736 - LRK54_RS02700 0.18 -0.5 578,736 - LRK54_RS02700 0.18 +0.3 578,736 - LRK54_RS02700 0.18 -1.1 578,736 - LRK54_RS02700 0.18 -0.6 579,016 - -0.4 579,039 + -1.0 579,104 + +0.0 579,104 + +0.2 579,104 + +1.2 579,104 + +0.2 579,104 + -1.2 579,104 + -1.0 579,104 + +1.2 579,104 + +1.2 579,104 + +1.2 579,104 + -0.9 579,104 + +0.0 579,104 + -0.6 579,104 + +1.8 579,104 + +1.2 579,104 + -2.0 579,104 + -2.5 579,104 + -2.1 579,104 + -0.3 579,105 - -0.8 579,105 - +0.4 579,105 - -1.1 579,105 - +1.2 579,105 - +1.2 579,105 - -0.8 579,105 - +2.2 579,105 - +1.2 579,105 - +0.4 579,105 - -0.4 579,105 - -0.6 579,105 - +1.2 579,105 - -0.6 579,105 - +1.2 579,106 + +0.0 579,106 + -0.1 579,106 + +1.2 579,106 + -0.2 579,107 - -2.0 579,107 - -1.4 579,107 - +1.2 579,107 - +0.4 579,107 - -1.2 579,107 - +0.0 579,107 - +0.2
Or see this region's nucleotide sequence