Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17550

Experiment: 1E-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1E-T1
3,834,669	+		LRK54_RS17545	0.17	+0.0
3,834,669	+		LRK54_RS17545	0.17	-1.0
3,834,669	+		LRK54_RS17545	0.17	-1.4
3,834,669	+		LRK54_RS17545	0.17	-0.4
3,834,669	+		LRK54_RS17545	0.17	+1.7
3,834,669	+		LRK54_RS17545	0.17	-1.1
3,834,669	+		LRK54_RS17545	0.17	-0.3
3,834,669	+		LRK54_RS17545	0.17	-0.3
3,834,669	+		LRK54_RS17545	0.17	+0.2
3,834,669	+		LRK54_RS17545	0.17	+0.7
3,834,670	-		LRK54_RS17545	0.17	+0.2
3,834,670	-		LRK54_RS17545	0.17	-0.6
3,834,670	-		LRK54_RS17545	0.17	+0.3
3,834,670	-		LRK54_RS17545	0.17	-0.1
3,834,670	-		LRK54_RS17545	0.17	+1.7
3,834,670	-		LRK54_RS17545	0.17	+0.7
3,834,670	-		LRK54_RS17545	0.17	+1.7
3,834,670	-		LRK54_RS17545	0.17	-0.5
3,834,670	-		LRK54_RS17545	0.17	-0.3
3,834,670	-		LRK54_RS17545	0.17	-1.1
3,834,670	-		LRK54_RS17545	0.17	-0.3
3,834,670	-		LRK54_RS17545	0.17	+0.2
3,834,670	-		LRK54_RS17545	0.17	+2.7
3,834,670	-		LRK54_RS17545	0.17	-0.3
3,834,773	+		LRK54_RS17545	0.28	+0.7
3,834,774	-		LRK54_RS17545	0.28	+0.7
3,834,948	+		LRK54_RS17545	0.45	-0.3
3,834,948	+		LRK54_RS17545	0.45	+0.2
3,834,948	+		LRK54_RS17545	0.45	+0.4
3,834,949	-		LRK54_RS17545	0.45	-0.6
3,834,949	-		LRK54_RS17545	0.45	-1.4
3,835,045	+		LRK54_RS17545	0.55	-0.4
3,835,203	+		LRK54_RS17545	0.71	+0.2
3,835,203	+		LRK54_RS17545	0.71	+0.7
3,835,203	+		LRK54_RS17545	0.71	+0.2
3,835,203	+		LRK54_RS17545	0.71	+0.7
3,835,203	+		LRK54_RS17545	0.71	-1.5
3,835,203	+		LRK54_RS17545	0.71	+1.7
3,835,203	+		LRK54_RS17545	0.71	+0.7
3,835,203	+		LRK54_RS17545	0.71	-1.1
3,835,203	+		LRK54_RS17545	0.71	+2.7
3,835,203	+		LRK54_RS17545	0.71	+1.7
3,835,203	+		LRK54_RS17545	0.71	-0.1
3,835,204	-		LRK54_RS17545	0.71	-0.6
3,835,204	-		LRK54_RS17545	0.71	-1.0
3,835,204	-		LRK54_RS17545	0.71	+0.7
3,835,204	-		LRK54_RS17545	0.71	+0.7
3,835,380	+		LRK54_RS17545	0.89	+0.7
3,835,380	+		LRK54_RS17545	0.89	-0.6
3,835,381	-		LRK54_RS17545	0.90	+0.4
3,835,381	-		LRK54_RS17545	0.90	-0.6
3,835,381	-		LRK54_RS17545	0.90	-0.9
3,835,381	-		LRK54_RS17545	0.90	-0.6
3,835,381	-		LRK54_RS17545	0.90	+1.7
3,835,381	-		LRK54_RS17545	0.90	-1.3
3,835,414	+				+0.3
3,835,414	+				-1.4
3,835,414	+				+0.7
3,835,415	-				-1.4
3,835,415	-				-1.8
3,835,415	-				-0.7
3,835,459	+				-0.8
3,835,459	+				-1.1
3,835,460	-				+0.7
3,835,460	-				-0.6
3,835,460	-				+1.7
3,835,460	-				-0.3
3,835,460	-				+0.7
3,835,460	-				-0.7
3,835,460	-				+0.2
3,835,460	-				+0.2
3,835,460	-				+0.2
3,835,486	+				-0.3
3,835,486	+				-0.3
3,835,486	+				-1.1
3,835,486	+				+1.7
3,835,486	+				+0.4
3,835,486	+				+0.2
3,835,487	-				+1.7
3,835,487	-				-0.8
3,835,487	-				-1.3
3,835,487	-				+0.2
3,835,487	-				-1.3
3,835,505	+				+1.3
3,835,506	-				-1.2
3,835,606	+		LRK54_RS17550	0.16	-0.6
3,835,607	-		LRK54_RS17550	0.16	+1.7
3,835,741	+		LRK54_RS17550	0.57	-0.8
3,835,741	+		LRK54_RS17550	0.57	-1.1
3,835,741	+		LRK54_RS17550	0.57	-2.3
3,835,741	+		LRK54_RS17550	0.57	+0.4
3,835,741	+		LRK54_RS17550	0.57	-0.6
3,835,741	+		LRK54_RS17550	0.57	+1.7
3,835,742	-		LRK54_RS17550	0.57	+0.5
3,835,742	-		LRK54_RS17550	0.57	+0.5
3,835,742	-		LRK54_RS17550	0.57	+1.2
3,835,932	+				+1.2
3,835,932	+				+0.2
3,835,932	+				-0.6
3,835,932	+				+0.7
3,835,932	+				+2.3
3,835,933	-				+1.2
3,835,933	-				-0.6
3,835,933	-				+0.4
3,836,067	-				-1.4
3,836,096	-				-0.8
3,836,096	-				+0.2
3,836,241	+		LRK54_RS17555	0.12	-1.7
3,836,241	+		LRK54_RS17555	0.12	-0.3
3,836,241	+		LRK54_RS17555	0.12	-0.3
3,836,241	+		LRK54_RS17555	0.12	-0.6
3,836,241	+		LRK54_RS17555	0.12	+1.7
3,836,241	+		LRK54_RS17555	0.12	+0.7
3,836,241	+		LRK54_RS17555	0.12	-0.6
3,836,241	+		LRK54_RS17555	0.12	-0.8
3,836,242	-		LRK54_RS17555	0.12	+0.2
3,836,242	-		LRK54_RS17555	0.12	-0.1
3,836,242	-		LRK54_RS17555	0.12	-0.6
3,836,242	-		LRK54_RS17555	0.12	+2.7
3,836,242	-		LRK54_RS17555	0.12	+1.7
3,836,242	-		LRK54_RS17555	0.12	+1.2
3,836,242	-		LRK54_RS17555	0.12	-1.7
3,836,340	+		LRK54_RS17555	0.15	+1.7
3,836,340	+		LRK54_RS17555	0.15	-1.1
3,836,341	-		LRK54_RS17555	0.15	-1.7
3,836,439	+		LRK54_RS17555	0.18	-0.3
3,836,439	+		LRK54_RS17555	0.18	+1.7
3,836,439	+		LRK54_RS17555	0.18	+1.7
3,836,440	-		LRK54_RS17555	0.18	+0.2
3,836,440	-		LRK54_RS17555	0.18	-2.5
3,836,442	+		LRK54_RS17555	0.18	+1.7
3,836,442	+		LRK54_RS17555	0.18	-0.6
3,836,443	-		LRK54_RS17555	0.18	-1.6
3,836,443	-		LRK54_RS17555	0.18	+1.2
3,836,542	-		LRK54_RS17555	0.21	-0.6
3,836,542	-		LRK54_RS17555	0.21	-0.6
3,836,574	+		LRK54_RS17555	0.22	+1.7
3,836,574	+		LRK54_RS17555	0.22	-0.8
3,836,574	+		LRK54_RS17555	0.22	+2.7
3,836,575	-		LRK54_RS17555	0.22	+0.7
3,836,575	-		LRK54_RS17555	0.22	-0.6
3,836,726	+		LRK54_RS17555	0.27	-0.6
3,836,727	-		LRK54_RS17555	0.27	-0.8
3,836,727	-		LRK54_RS17555	0.27	-0.7