Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13405

Experiment: 1C-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1C-T1
3,003,999	-		LRK54_RS13400	0.21	-0.3
3,004,046	+		LRK54_RS13400	0.26	+0.9
3,004,047	-		LRK54_RS13400	0.26	-1.1
3,004,047	-		LRK54_RS13400	0.26	-0.4
3,004,538	+		LRK54_RS13400	0.78	-0.5
3,004,941	+				-0.1
3,004,941	+				-0.1
3,004,941	+				+0.6
3,004,941	+				-0.6
3,004,941	+				+0.3
3,004,941	+				-0.8
3,004,941	+				-1.0
3,004,941	+				+0.1
3,004,941	+				+0.2
3,004,941	+				-1.6
3,004,941	+				+0.5
3,004,941	+				-1.4
3,004,941	+				-0.1
3,004,941	+				+0.9
3,004,941	+				+0.5
3,004,941	+				-2.1
3,004,941	+				-1.1
3,004,941	+				-1.8
3,004,941	+				-0.1
3,004,941	+				-1.0
3,004,941	+				-0.1
3,004,941	+				+0.5
3,004,941	+				-0.8
3,004,941	+				-0.3
3,004,941	+				-2.6
3,004,941	+				-1.8
3,004,941	+				-0.6
3,004,941	+				-1.1
3,004,942	-				-1.0
3,004,942	-				-1.1
3,004,942	-				-0.1
3,004,942	-				+0.9
3,004,942	-				-0.2
3,004,942	-				-0.9
3,004,942	-				+0.9
3,004,942	-				-1.2
3,004,942	-				-0.8
3,004,942	-				-0.7
3,004,942	-				+0.9
3,004,942	-				-1.0
3,004,942	-				-0.4
3,004,942	-				-1.0
3,004,942	-				-1.6
3,004,942	-				+0.6
3,004,942	-				+0.9
3,004,942	-				-0.4
3,004,942	-				+1.9
3,004,942	-				-0.1
3,004,942	-				+0.9
3,004,942	-				+0.1
3,004,942	-				+0.6
3,004,942	-				-1.4
3,004,942	-				-0.4
3,004,942	-				-1.9
3,004,942	-				-0.1
3,004,942	-				-1.1
3,004,942	-				-0.7
3,004,942	-				+0.9
3,004,942	-				-0.1
3,004,945	+				+2.2
3,004,945	+				-1.8
3,004,945	+				+0.3
3,004,945	+				-1.1
3,004,945	+				-0.7
3,004,945	+				+0.1
3,004,945	+				-0.7
3,004,945	+				-2.1
3,004,945	+				+0.5
3,004,945	+				-0.4
3,004,945	+				-0.1
3,004,945	+				-0.5
3,004,945	+				-0.7
3,004,945	+				-1.3
3,004,945	+				-0.8
3,004,945	+				+0.1
3,004,945	+				-2.1
3,004,945	+				-0.3
3,004,945	+				-1.0
3,004,945	+				+1.9
3,004,945	+				-0.7
3,004,945	+				+0.5
3,004,945	+				-0.3
3,004,945	+				-1.9
3,004,945	-				-1.4
3,004,946	-				-1.9
3,004,946	-				+1.9
3,004,946	-				-1.1
3,004,946	-				+0.9
3,004,946	-				-1.1
3,004,946	-				+0.3
3,004,946	-				-0.7
3,004,946	-				+0.2
3,004,946	-				-0.6
3,004,946	-				-0.8
3,004,946	-				-1.0
3,004,946	-				-1.3
3,004,946	-				-0.6
3,004,946	-				+0.9
3,004,946	-				-1.4
3,004,946	-				-0.1
3,004,946	-				-0.9
3,004,946	-				-1.4
3,004,946	-				-0.7
3,004,946	-				+1.9
3,004,946	-				+0.9
3,004,946	-				+0.1
3,004,946	-				-0.8
3,004,946	-				-0.4
3,004,946	-				-1.4
3,004,946	-				+0.5
3,004,946	-				+0.9
3,004,946	-				-1.4
3,004,946	-				-0.7
3,004,946	-				-0.3
3,004,946	-				-0.4
3,005,012	-		LRK54_RS13405	0.25	-0.1
3,005,012	-		LRK54_RS13405	0.25	-0.1
3,005,021	+		LRK54_RS13405	0.27	-1.1
3,005,021	+		LRK54_RS13405	0.27	+0.2
3,005,022	-		LRK54_RS13405	0.28	-0.7
3,005,153	+		LRK54_RS13405	0.60	+0.9
3,005,153	+		LRK54_RS13405	0.60	-0.7
3,005,240	+		LRK54_RS13405	0.81	-1.4
3,005,240	+		LRK54_RS13405	0.81	-0.4
3,005,240	+		LRK54_RS13405	0.81	+0.9
3,005,241	-		LRK54_RS13405	0.82	-1.1
3,005,241	-		LRK54_RS13405	0.82	-1.4
3,005,385	-		LRK54_RS13410	0.17	-1.1
3,005,437	+		LRK54_RS13410	0.29	-1.4
3,005,437	+		LRK54_RS13410	0.29	-1.1
3,005,437	+		LRK54_RS13410	0.29	-0.8
3,005,557	+		LRK54_RS13410	0.58	-0.7
3,005,558	-		LRK54_RS13410	0.59	-0.6
3,005,593	+		LRK54_RS13410	0.67	-1.1
3,005,593	+		LRK54_RS13410	0.67	-1.2
3,005,593	+		LRK54_RS13410	0.67	-0.3
3,005,593	+		LRK54_RS13410	0.67	-0.1
3,005,594	-		LRK54_RS13410	0.67	+0.2
3,005,594	-		LRK54_RS13410	0.67	-0.2
3,005,594	-		LRK54_RS13410	0.67	-0.1
3,005,594	-		LRK54_RS13410	0.67	-1.4
3,005,594	-		LRK54_RS13410	0.67	+0.2
3,005,599	+		LRK54_RS13410	0.68	-0.3
3,005,599	+		LRK54_RS13410	0.68	-0.1
3,005,599	+		LRK54_RS13410	0.68	+0.1
3,005,599	+		LRK54_RS13410	0.68	-0.1
3,005,599	+		LRK54_RS13410	0.68	-2.4
3,005,599	+		LRK54_RS13410	0.68	+0.3
3,005,599	+		LRK54_RS13410	0.68	-1.1
3,005,600	-		LRK54_RS13410	0.69	-0.7
3,005,600	-		LRK54_RS13410	0.69	-0.7
3,005,600	-		LRK54_RS13410	0.69	+0.6
3,005,600	-		LRK54_RS13410	0.69	-0.8
3,005,600	-		LRK54_RS13410	0.69	+1.9
3,005,600	-		LRK54_RS13410	0.69	-1.0
3,005,600	-		LRK54_RS13410	0.69	-1.3
3,005,600	-		LRK54_RS13410	0.69	+0.9
3,005,600	-		LRK54_RS13410	0.69	-0.3
3,005,600	-		LRK54_RS13410	0.69	-0.7
3,005,659	+		LRK54_RS13410	0.83	-1.7
3,005,660	-		LRK54_RS13410	0.83	-0.3
3,006,251	+		LRK54_RS13415	0.76	-0.8
3,006,251	+		LRK54_RS13415	0.76	+0.9
3,006,251	+		LRK54_RS13415	0.76	-0.1
3,006,251	+		LRK54_RS13415	0.76	-0.7
3,006,251	+		LRK54_RS13415	0.76	-1.6
3,006,251	+		LRK54_RS13415	0.76	+0.5
3,006,251	+		LRK54_RS13415	0.76	-0.5
3,006,251	+		LRK54_RS13415	0.76	-0.4
3,006,251	+		LRK54_RS13415	0.76	-0.9
3,006,252	-		LRK54_RS13415	0.76	+0.9
3,006,252	-		LRK54_RS13415	0.76	+1.5
3,006,252	-		LRK54_RS13415	0.76	-1.9
3,006,252	-		LRK54_RS13415	0.76	-0.2
3,006,252	-		LRK54_RS13415	0.76	-0.4
3,006,252	-		LRK54_RS13415	0.76	-0.8
3,006,277	+		LRK54_RS13415	0.80	-0.9
3,006,278	-		LRK54_RS13415	0.80	-0.3
3,006,293	+		LRK54_RS13415	0.83	-0.1
3,006,293	+		LRK54_RS13415	0.83	-1.7
3,006,293	+		LRK54_RS13415	0.83	-0.4
3,006,293	+		LRK54_RS13415	0.83	-0.3
3,006,293	+		LRK54_RS13415	0.83	-0.1
3,006,294	-		LRK54_RS13415	0.83	+0.9
3,006,294	-		LRK54_RS13415	0.83	-1.6
3,006,294	-		LRK54_RS13415	0.83	-0.1
3,006,294	-		LRK54_RS13415	0.83	-1.3
3,006,294	-		LRK54_RS13415	0.83	-0.7
3,006,294	-		LRK54_RS13415	0.83	-0.7
3,006,294	-		LRK54_RS13415	0.83	-0.4
3,006,294	-		LRK54_RS13415	0.83	-1.1