Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09205

Experiment: 1C-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1C-T1
2,015,799	+		LRK54_RS09200	0.36	+0.6
2,015,799	+		LRK54_RS09200	0.36	+1.6
2,015,799	+		LRK54_RS09200	0.36	+0.6
2,015,799	+		LRK54_RS09200	0.36	+0.6
2,015,799	+		LRK54_RS09200	0.36	+0.1
2,015,799	+		LRK54_RS09200	0.36	-0.4
2,015,799	+		LRK54_RS09200	0.36	+0.6
2,015,799	+		LRK54_RS09200	0.36	-1.7
2,015,800	-		LRK54_RS09200	0.36	+0.6
2,015,800	-		LRK54_RS09200	0.36	-0.4
2,015,800	-		LRK54_RS09200	0.36	+0.6
2,015,800	-		LRK54_RS09200	0.36	+0.6
2,015,800	-		LRK54_RS09200	0.36	+0.6
2,015,800	-		LRK54_RS09200	0.36	-1.4
2,015,800	-		LRK54_RS09200	0.36	-1.4
2,015,800	-		LRK54_RS09200	0.36	-0.1
2,015,800	-		LRK54_RS09200	0.36	+0.6
2,015,883	+		LRK54_RS09200	0.42	-2.4
2,015,883	+		LRK54_RS09200	0.42	+2.2
2,015,883	+		LRK54_RS09200	0.42	-2.2
2,015,883	+		LRK54_RS09200	0.42	+1.6
2,015,883	+		LRK54_RS09200	0.42	+0.6
2,015,883	+		LRK54_RS09200	0.42	-1.4
2,015,883	+		LRK54_RS09200	0.42	-1.7
2,015,883	+		LRK54_RS09200	0.42	-0.0
2,015,883	+		LRK54_RS09200	0.42	-0.4
2,015,884	-		LRK54_RS09200	0.43	+0.6
2,015,884	-		LRK54_RS09200	0.43	-0.9
2,015,884	-		LRK54_RS09200	0.43	+0.1
2,015,884	-		LRK54_RS09200	0.43	-0.9
2,015,884	-		LRK54_RS09200	0.43	-0.9
2,015,884	-		LRK54_RS09200	0.43	+0.6
2,015,884	-		LRK54_RS09200	0.43	+2.6
2,015,884	-		LRK54_RS09200	0.43	+1.6
2,015,884	-		LRK54_RS09200	0.43	-0.4
2,015,884	-		LRK54_RS09200	0.43	+0.6
2,015,884	-		LRK54_RS09200	0.43	-0.7
2,015,959	+		LRK54_RS09200	0.48	+0.6
2,015,959	+		LRK54_RS09200	0.48	-0.9
2,015,959	+		LRK54_RS09200	0.48	+1.2
2,015,959	+		LRK54_RS09200	0.48	-1.7
2,015,959	+		LRK54_RS09200	0.48	-0.9
2,015,959	+		LRK54_RS09200	0.48	-1.2
2,015,959	+		LRK54_RS09200	0.48	+0.6
2,015,959	+		LRK54_RS09200	0.48	+0.1
2,015,959	+		LRK54_RS09200	0.48	+0.6
2,016,123	+		LRK54_RS09200	0.61	-0.9
2,016,123	+		LRK54_RS09200	0.61	-1.4
2,016,174	+		LRK54_RS09200	0.65	+0.6
2,016,174	+		LRK54_RS09200	0.65	+1.6
2,016,174	+		LRK54_RS09200	0.65	+1.6
2,016,174	+		LRK54_RS09200	0.65	+0.6
2,016,174	+		LRK54_RS09200	0.65	+0.6
2,016,174	+		LRK54_RS09200	0.65	-0.4
2,016,174	+		LRK54_RS09200	0.65	-0.4
2,016,174	+		LRK54_RS09200	0.65	-0.4
2,016,174	+		LRK54_RS09200	0.65	-0.4
2,016,175	-		LRK54_RS09200	0.65	+0.6
2,016,175	-		LRK54_RS09200	0.65	+0.6
2,016,175	-		LRK54_RS09200	0.65	+1.6
2,016,175	-		LRK54_RS09200	0.65	+0.6
2,016,175	-		LRK54_RS09200	0.65	-0.9
2,016,175	-		LRK54_RS09200	0.65	-2.5
2,016,175	-		LRK54_RS09200	0.65	+0.6
2,016,175	-		LRK54_RS09200	0.65	-1.7
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	-2.4
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+1.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	-0.4
2,016,291	+		LRK54_RS09200	0.74	+0.6
2,016,291	+		LRK54_RS09200	0.74	-0.9
2,016,291	+		LRK54_RS09200	0.74	-1.4
2,016,292	-		LRK54_RS09200	0.74	-0.4
2,016,292	-		LRK54_RS09200	0.74	-0.4
2,016,292	-		LRK54_RS09200	0.74	+0.6
2,016,292	-		LRK54_RS09200	0.74	-1.4
2,016,292	-		LRK54_RS09200	0.74	-1.7
2,016,292	-		LRK54_RS09200	0.74	-0.4
2,016,436	-		LRK54_RS09200	0.85	+0.6
2,016,436	-		LRK54_RS09200	0.85	+0.6
2,016,525	+				+1.6
2,016,525	+				-0.4
2,016,525	+				+0.6
2,016,525	+				-0.9
2,016,526	-				-0.4
2,016,526	-				+0.6
2,016,636	+				+0.3
2,016,636	+				-0.9
2,016,636	+				+0.1
2,016,636	+				-1.5
2,016,636	+				-1.4
2,016,636	+				-0.4
2,016,636	+				+0.2
2,016,636	+				-1.9
2,016,636	+				-0.4
2,016,636	+				-0.4
2,016,636	+				+1.6
2,016,636	+				-1.8
2,016,636	+				+0.6
2,016,636	+				+0.1
2,016,636	+				-0.4
2,016,636	+				-2.4
2,016,636	+				-0.4
2,016,636	+				-1.8
2,016,636	+				-1.2
2,016,636	+				-1.0
2,016,636	+				+0.6
2,016,636	+				-0.7
2,016,636	+				-1.7
2,016,636	+				-0.8
2,016,636	+				-1.4
2,016,636	+				+0.6
2,016,636	+				+0.6
2,016,636	+				-0.1
2,016,636	+				+0.6
2,016,636	+				-1.5
2,016,636	+				-0.4
2,016,636	+				-0.4
2,016,637	-				-0.4
2,016,637	-				+0.6
2,016,637	-				+0.1
2,016,637	-				-0.4
2,016,637	-				-0.9
2,016,637	-				+0.6
2,016,637	-				-0.9
2,016,637	-				-0.9
2,016,637	-				+0.2
2,016,637	-				-0.9
2,016,637	-				-0.4
2,016,637	-				-0.4
2,016,637	-				-2.4
2,016,637	-				+0.1
2,016,637	-				+0.1
2,016,637	-				-0.4
2,016,637	-				-0.7
2,016,637	-				-1.2
2,016,637	-				-2.4
2,016,637	-				-0.4
2,016,637	-				-0.6
2,016,637	-				-1.8
2,016,637	-				+0.6
2,016,637	-				-0.2
2,016,712	+				-0.1
2,016,712	+				+0.6
2,016,712	+				+0.1
2,016,712	+				-1.7
2,016,712	+				-0.2
2,016,712	+				-0.9
2,016,712	+				-1.7
2,016,712	+				-0.4
2,016,712	+				+0.1
2,016,712	+				-1.2
2,016,712	+				-0.5
2,016,712	+				-0.7
2,016,712	+				-0.5
2,016,713	-				-0.3
2,016,713	-				+1.0
2,016,713	-				-0.9
2,016,713	-				-0.9
2,016,713	-				+0.6
2,016,713	-				+1.0
2,016,713	-				-0.4
2,016,713	-				+0.6
2,016,713	-				+0.6
2,016,713	-				-1.7
2,016,713	-				-0.4
2,016,713	-				-1.1
2,016,727	+				+0.9
2,016,728	-				+0.1
2,016,728	-				+3.0
2,016,757	+				-0.4
2,016,757	+				-0.5
2,016,757	+				+0.6
2,016,757	+				-1.2
2,016,757	+				-1.4
2,016,757	+				-1.8
2,016,757	+				+1.0
2,016,757	+				+0.6
2,016,757	+				-0.5
2,016,757	+				-0.6
2,016,757	+				-1.1
2,016,757	+				+0.6
2,016,757	+				-1.4
2,016,757	+				-1.3
2,016,757	+				-0.4
2,016,757	+				-0.5
2,016,757	+				-0.5
2,016,757	+				-1.4
2,016,757	+				-0.8
2,016,758	-				+0.6
2,016,758	-				-1.7
2,016,758	-				+0.6
2,016,758	-				-1.4
2,016,758	-				+0.6
2,016,758	-				+0.2
2,016,758	-				-0.9
2,016,758	-				+1.1
2,016,758	-				+0.6
2,016,758	-				-0.4
2,016,774	+				-2.7
2,016,774	+				+0.6
2,016,774	+				-0.9
2,016,774	+				-0.9
2,016,774	+				+0.3
2,016,774	+				-0.4
2,016,774	+				+0.1
2,016,774	+				+1.1
2,016,774	+				+1.2
2,016,774	+				-0.3
2,016,775	-				-1.9
2,016,775	-				-1.2
2,016,775	-				-1.7
2,016,775	-				-1.4
2,016,775	-				-0.6
2,016,874	+		LRK54_RS09205	0.32	-0.1
2,016,874	+		LRK54_RS09205	0.32	-0.5
2,016,874	+		LRK54_RS09205	0.32	-2.0
2,016,874	+		LRK54_RS09205	0.32	-0.4
2,016,874	+		LRK54_RS09205	0.32	+1.2
2,016,874	+		LRK54_RS09205	0.32	+0.6
2,016,874	+		LRK54_RS09205	0.32	+0.6
2,016,874	+		LRK54_RS09205	0.32	-1.7
2,016,874	+		LRK54_RS09205	0.32	+0.4
2,016,874	+		LRK54_RS09205	0.32	-0.9
2,016,874	+		LRK54_RS09205	0.32	+0.6
2,016,874	+		LRK54_RS09205	0.32	-0.2
2,016,874	+		LRK54_RS09205	0.32	-1.3
2,016,875	-		LRK54_RS09205	0.32	-0.5
2,016,875	-		LRK54_RS09205	0.32	+0.6
2,016,875	-		LRK54_RS09205	0.32	+1.6
2,016,875	-		LRK54_RS09205	0.32	-1.4
2,016,875	-		LRK54_RS09205	0.32	-1.1
2,016,875	-		LRK54_RS09205	0.32	-3.1
2,016,875	-		LRK54_RS09205	0.32	+0.1
2,016,875	-		LRK54_RS09205	0.32	-1.9
2,016,875	-		LRK54_RS09205	0.32	-2.7
2,016,875	-		LRK54_RS09205	0.32	+0.6
2,016,875	-		LRK54_RS09205	0.32	+0.4
2,016,875	-		LRK54_RS09205	0.32	-1.4
2,016,875	-		LRK54_RS09205	0.32	+0.1
2,016,875	-		LRK54_RS09205	0.32	-0.0
2,016,875	-		LRK54_RS09205	0.32	+0.2
2,016,875	-		LRK54_RS09205	0.32	-1.5
2,016,875	-		LRK54_RS09205	0.32	-1.9
2,016,875	-		LRK54_RS09205	0.32	-0.6
2,017,057	+				+1.3
2,017,057	+				-1.7
2,017,057	+				-1.7
2,017,084	+				-0.4
2,017,084	+				-0.9
2,017,084	+				-0.4
2,017,084	+				-1.4
2,017,084	+				-1.4
2,017,084	+				-1.4
2,017,084	+				-0.4
2,017,084	+				+0.6
2,017,085	-				-0.9
2,017,085	-				-0.7
2,017,085	-				-0.4
2,017,085	-				+2.2
2,017,085	-				+2.0
2,017,085	-				-0.4
2,017,383	+		LRK54_RS09210	0.29	+0.6
2,017,383	+		LRK54_RS09210	0.29	+0.6
2,017,383	+		LRK54_RS09210	0.29	-1.7
2,017,383	+		LRK54_RS09210	0.29	-1.4
2,017,383	+		LRK54_RS09210	0.29	+0.6
2,017,383	+		LRK54_RS09210	0.29	+0.1
2,017,383	+		LRK54_RS09210	0.29	-1.7
2,017,383	+		LRK54_RS09210	0.29	+0.6
2,017,384	-		LRK54_RS09210	0.29	-0.4
2,017,384	-		LRK54_RS09210	0.29	-2.4
2,017,384	-		LRK54_RS09210	0.29	+0.6
2,017,444	+		LRK54_RS09210	0.34	+1.6
2,017,444	+		LRK54_RS09210	0.34	-0.9
2,017,444	+		LRK54_RS09210	0.34	-0.9
2,017,444	+		LRK54_RS09210	0.34	-0.4
2,017,445	-		LRK54_RS09210	0.34	-0.9
2,017,445	-		LRK54_RS09210	0.34	+0.6
2,017,445	-		LRK54_RS09210	0.34	-1.9
2,017,457	+		LRK54_RS09210	0.35	+0.6
2,017,457	+		LRK54_RS09210	0.35	+0.6
2,017,458	-		LRK54_RS09210	0.36	-2.2
2,017,483	+		LRK54_RS09210	0.38	-2.4
2,017,483	+		LRK54_RS09210	0.38	-0.4
2,017,483	+		LRK54_RS09210	0.38	+0.6
2,017,483	+		LRK54_RS09210	0.38	-0.9
2,017,483	+		LRK54_RS09210	0.38	+0.6
2,017,483	+		LRK54_RS09210	0.38	+0.6
2,017,484	-		LRK54_RS09210	0.38	-0.4
2,017,484	-		LRK54_RS09210	0.38	+1.6
2,017,484	-		LRK54_RS09210	0.38	+0.6
2,017,484	-		LRK54_RS09210	0.38	-0.4
2,017,484	-		LRK54_RS09210	0.38	-1.9
2,017,484	-		LRK54_RS09210	0.38	-1.7
2,017,540	+		LRK54_RS09210	0.43	+0.6
2,017,540	+		LRK54_RS09210	0.43	+0.6
2,017,540	+		LRK54_RS09210	0.43	-0.9
2,017,540	+		LRK54_RS09210	0.43	-0.4
2,017,540	+		LRK54_RS09210	0.43	+0.6
2,017,540	+		LRK54_RS09210	0.43	-0.4
2,017,540	+		LRK54_RS09210	0.43	+0.6
2,017,540	+		LRK54_RS09210	0.43	+0.6
2,017,541	-		LRK54_RS09210	0.43	-0.4
2,017,541	-		LRK54_RS09210	0.43	+0.6
2,017,541	-		LRK54_RS09210	0.43	+0.6
2,017,541	-		LRK54_RS09210	0.43	-0.9
2,017,541	-		LRK54_RS09210	0.43	+2.2