Experiment: 1C-T1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01395 and LRK54_RS01400 are separated by 111 nucleotides LRK54_RS01400 and LRK54_RS01405 are separated by 107 nucleotides LRK54_RS01405 and LRK54_RS01410 are separated by 44 nucleotides
LRK54_RS01395: LRK54_RS01395 - arsenate reductase ArsC, at 303,038 to 303,544
_RS01395
LRK54_RS01400: LRK54_RS01400 - arsenical resistance protein ArsH, at 303,656 to 304,387
_RS01400
LRK54_RS01405: LRK54_RS01405 - YdeI/OmpD-associated family protein, at 304,495 to 305,076
_RS01405
LRK54_RS01410: LRK54_RS01410 - ABC transporter ATP-binding protein/permease, at 305,121 to 306,965
_RS01410
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 303.585 kb on - strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.643 kb on + strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.644 kb on - strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.645 kb on + strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.646 kb on - strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.655 kb on + strand at 303.656 kb on - strand at 303.656 kb on - strand at 303.656 kb on - strand at 303.656 kb on - strand at 303.731 kb on + strand, within LRK54_RS01400 at 303.731 kb on + strand, within LRK54_RS01400 at 303.732 kb on - strand, within LRK54_RS01400 at 303.732 kb on - strand, within LRK54_RS01400 at 303.732 kb on - strand, within LRK54_RS01400 at 304.190 kb on + strand, within LRK54_RS01400 at 304.190 kb on + strand, within LRK54_RS01400 at 304.191 kb on - strand, within LRK54_RS01400 at 304.191 kb on - strand, within LRK54_RS01400 at 304.191 kb on - strand, within LRK54_RS01400 at 304.259 kb on + strand, within LRK54_RS01400 at 304.259 kb on + strand, within LRK54_RS01400 at 304.260 kb on - strand, within LRK54_RS01400 at 304.274 kb on + strand, within LRK54_RS01400 at 304.274 kb on + strand, within LRK54_RS01400 at 304.420 kb on + strand at 304.496 kb on + strand at 304.496 kb on + strand at 304.497 kb on - strand at 304.497 kb on - strand at 304.565 kb on + strand, within LRK54_RS01405 at 304.565 kb on + strand, within LRK54_RS01405 at 304.565 kb on + strand, within LRK54_RS01405 at 304.565 kb on + strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 304.566 kb on - strand, within LRK54_RS01405 at 305.105 kb on + strand at 305.105 kb on + strand at 305.105 kb on + strand at 305.186 kb on - strand at 305.492 kb on - strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.596 kb on + strand, within LRK54_RS01410 at 305.597 kb on - strand, within LRK54_RS01410 at 305.597 kb on - strand, within LRK54_RS01410 at 305.597 kb on - strand, within LRK54_RS01410 at 305.636 kb on + strand, within LRK54_RS01410 at 305.636 kb on + strand, within LRK54_RS01410 at 305.636 kb on + strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.637 kb on - strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.734 kb on + strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.735 kb on - strand, within LRK54_RS01410 at 305.857 kb on + strand, within LRK54_RS01410 at 305.857 kb on + strand, within LRK54_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction 1C-T1 remove 303,585 - -0.2 303,643 + -1.1 303,643 + +0.4 303,643 + +0.6 303,643 + -1.1 303,643 + +1.2 303,643 + -0.3 303,643 + +0.5 303,643 + +1.8 303,643 + +0.2 303,643 + -0.1 303,643 + -1.6 303,643 + -1.4 303,643 + -0.1 303,643 + +0.5 303,643 + -1.4 303,643 + +0.6 303,643 + +1.2 303,643 + -1.4 303,643 + +0.2 303,643 + -1.1 303,643 + +2.5 303,644 - -1.3 303,644 - +0.2 303,644 - -0.4 303,644 - +0.2 303,644 - -0.4 303,644 - -0.3 303,644 - +0.2 303,644 - +2.2 303,644 - +0.2 303,644 - +0.2 303,644 - -0.6 303,644 - -2.0 303,644 - +1.2 303,644 - +0.2 303,644 - -0.8 303,644 - -1.1 303,644 - -0.3 303,644 - +1.2 303,644 - +1.2 303,644 - +0.0 303,644 - -0.4 303,644 - -2.0 303,644 - -0.4 303,645 + +0.2 303,645 + +0.2 303,645 + +1.2 303,645 + +0.2 303,645 + -0.6 303,646 - -0.3 303,646 - -1.4 303,646 - -0.4 303,646 - -0.9 303,646 - -1.6 303,646 - +0.2 303,655 + +0.2 303,655 + -1.1 303,655 + +3.2 303,655 + +1.2 303,655 + +0.4 303,656 - -0.4 303,656 - -0.1 303,656 - -0.1 303,656 - -2.9 303,731 + LRK54_RS01400 0.10 -1.4 303,731 + LRK54_RS01400 0.10 -1.9 303,732 - LRK54_RS01400 0.10 -0.4 303,732 - LRK54_RS01400 0.10 -0.9 303,732 - LRK54_RS01400 0.10 -1.0 304,190 + LRK54_RS01400 0.73 +0.2 304,190 + LRK54_RS01400 0.73 -1.4 304,191 - LRK54_RS01400 0.73 +0.5 304,191 - LRK54_RS01400 0.73 +0.2 304,191 - LRK54_RS01400 0.73 -1.4 304,259 + LRK54_RS01400 0.82 +0.2 304,259 + LRK54_RS01400 0.82 -0.6 304,260 - LRK54_RS01400 0.83 -0.0 304,274 + LRK54_RS01400 0.84 +0.6 304,274 + LRK54_RS01400 0.84 -1.1 304,420 + -0.4 304,496 + +1.2 304,496 + +1.2 304,497 - -2.1 304,497 - +1.2 304,565 + LRK54_RS01405 0.12 -0.7 304,565 + LRK54_RS01405 0.12 -2.3 304,565 + LRK54_RS01405 0.12 +0.3 304,565 + LRK54_RS01405 0.12 -0.9 304,566 - LRK54_RS01405 0.12 -0.1 304,566 - LRK54_RS01405 0.12 -1.4 304,566 - LRK54_RS01405 0.12 +0.2 304,566 - LRK54_RS01405 0.12 -0.4 304,566 - LRK54_RS01405 0.12 -0.8 304,566 - LRK54_RS01405 0.12 -0.6 304,566 - LRK54_RS01405 0.12 -0.4 305,105 + +2.2 305,105 + +0.2 305,105 + +0.2 305,186 - +1.2 305,492 - LRK54_RS01410 0.20 +0.2 305,596 + LRK54_RS01410 0.26 +0.2 305,596 + LRK54_RS01410 0.26 +1.2 305,596 + LRK54_RS01410 0.26 +0.2 305,596 + LRK54_RS01410 0.26 +1.8 305,596 + LRK54_RS01410 0.26 +1.2 305,596 + LRK54_RS01410 0.26 +1.2 305,596 + LRK54_RS01410 0.26 -2.4 305,596 + LRK54_RS01410 0.26 -0.6 305,596 + LRK54_RS01410 0.26 +0.2 305,597 - LRK54_RS01410 0.26 +0.2 305,597 - LRK54_RS01410 0.26 -0.4 305,597 - LRK54_RS01410 0.26 +2.2 305,636 + LRK54_RS01410 0.28 +0.2 305,636 + LRK54_RS01410 0.28 -2.3 305,636 + LRK54_RS01410 0.28 -0.4 305,637 - LRK54_RS01410 0.28 +1.2 305,637 - LRK54_RS01410 0.28 +1.2 305,637 - LRK54_RS01410 0.28 -1.6 305,637 - LRK54_RS01410 0.28 -0.4 305,637 - LRK54_RS01410 0.28 +0.2 305,734 + LRK54_RS01410 0.33 +0.2 305,734 + LRK54_RS01410 0.33 +0.6 305,734 + LRK54_RS01410 0.33 +1.2 305,734 + LRK54_RS01410 0.33 +0.2 305,734 + LRK54_RS01410 0.33 +1.2 305,734 + LRK54_RS01410 0.33 -0.8 305,735 - LRK54_RS01410 0.33 +0.2 305,735 - LRK54_RS01410 0.33 +1.2 305,735 - LRK54_RS01410 0.33 +0.2 305,735 - LRK54_RS01410 0.33 +3.2 305,735 - LRK54_RS01410 0.33 +2.8 305,735 - LRK54_RS01410 0.33 +1.2 305,857 + LRK54_RS01410 0.40 -0.4 305,857 + LRK54_RS01410 0.40 +1.2
Or see this region's nucleotide sequence