Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15040

Experiment: 1A-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1A-T1
3,326,009	+		LRK54_RS15035	0.79	+1.2
3,326,009	+		LRK54_RS15035	0.79	+1.2
3,326,009	+		LRK54_RS15035	0.79	+1.2
3,326,009	+		LRK54_RS15035	0.79	+1.2
3,326,010	-		LRK54_RS15035	0.79	+1.2
3,326,010	-		LRK54_RS15035	0.79	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,123	+		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,124	-		LRK54_RS15035	0.86	+1.2
3,326,192	+				+1.2
3,326,193	-				+1.2
3,326,193	-				+1.2
3,326,193	-				+1.2
3,326,361	+				-0.8
3,326,361	+				-0.4
3,326,361	+				-0.0
3,326,361	+				-0.4
3,326,361	+				-1.0
3,326,361	+				+0.2
3,326,361	+				-1.2
3,326,361	+				+0.2
3,326,361	+				-0.2
3,326,361	+				-2.0
3,326,361	+				+0.2
3,326,361	+				-1.4
3,326,361	+				-0.4
3,326,361	+				+1.2
3,326,361	+				-1.2
3,326,361	+				+0.2
3,326,361	+				+0.2
3,326,362	-				-1.2
3,326,362	-				-0.2
3,326,362	-				+1.2
3,326,362	-				+1.2
3,326,362	-				+1.2
3,326,362	-				-1.2
3,326,362	-				-1.4
3,326,362	-				-0.4
3,326,362	-				-1.1
3,326,363	-				-0.1
3,326,421	+				+0.2
3,326,421	+				+1.2
3,326,421	+				+1.2
3,326,421	+				+1.2
3,326,421	+				-0.2
3,326,421	+				-1.8
3,326,421	+				-0.8
3,326,421	+				-0.4
3,326,421	+				-0.2
3,326,422	-				+0.7
3,326,422	-				-1.0
3,326,422	-				+1.2
3,326,422	-				-0.4
3,326,422	-				+0.2
3,326,422	-				+1.2
3,326,422	-				-0.7
3,326,422	-				+0.6
3,326,422	-				-0.4
3,326,422	-				+0.5
3,326,422	-				-0.4
3,326,422	-				+0.6
3,326,477	+				-1.2
3,326,477	+				-0.8
3,326,477	+				-2.5
3,326,477	+				+0.2
3,326,477	+				-1.7
3,326,477	+				+0.6
3,326,477	+				+0.2
3,326,477	+				-1.0
3,326,477	+				-0.5
3,326,477	+				+3.2
3,326,477	+				-2.7
3,326,477	+				+1.2
3,326,477	+				-1.0
3,326,477	+				+2.2
3,326,477	+				+2.2
3,326,478	-				-0.8
3,326,478	-				-0.8
3,326,478	-				+0.2
3,326,478	-				-0.4
3,326,478	-				-0.8
3,326,478	-				-0.4
3,326,478	-				-1.7
3,326,478	-				-0.4
3,326,478	-				-1.5
3,326,478	-				-0.8
3,326,478	-				+1.2
3,326,478	-				-0.4
3,326,478	-				+1.4
3,326,478	-				-0.4
3,326,478	-				-0.8
3,326,478	-				-0.8
3,326,478	-				-1.0
3,326,490	+		LRK54_RS15040	0.12	+0.6
3,326,490	+		LRK54_RS15040	0.12	-0.8
3,326,490	+		LRK54_RS15040	0.12	-1.4
3,326,490	+		LRK54_RS15040	0.12	-0.8
3,326,490	+		LRK54_RS15040	0.12	-3.0
3,326,491	-		LRK54_RS15040	0.12	+0.2
3,326,491	-		LRK54_RS15040	0.12	-0.4
3,326,491	-		LRK54_RS15040	0.12	-0.8
3,326,498	+		LRK54_RS15040	0.15	-1.7
3,326,498	+		LRK54_RS15040	0.15	+0.2
3,326,498	+		LRK54_RS15040	0.15	-0.8
3,326,498	+		LRK54_RS15040	0.15	-0.7
3,326,828	+		LRK54_RS15045	0.28	-0.2
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	-0.4
3,326,830	+		LRK54_RS15045	0.29	+0.6
3,326,830	+		LRK54_RS15045	0.29	-0.3
3,326,830	+		LRK54_RS15045	0.29	-0.7
3,326,830	+		LRK54_RS15045	0.29	-3.4
3,326,830	+		LRK54_RS15045	0.29	+2.7
3,326,830	+		LRK54_RS15045	0.29	-1.5
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	-2.9
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	+2.2
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	-1.1
3,326,830	+		LRK54_RS15045	0.29	-2.0
3,326,830	+		LRK54_RS15045	0.29	-1.3
3,326,830	+		LRK54_RS15045	0.29	+1.0
3,326,830	+		LRK54_RS15045	0.29	-0.7
3,326,830	+		LRK54_RS15045	0.29	+1.2
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	-1.2
3,326,830	+		LRK54_RS15045	0.29	-2.0
3,326,830	+		LRK54_RS15045	0.29	+1.6
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	-2.1
3,326,830	+		LRK54_RS15045	0.29	-0.8
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	-0.1
3,326,830	+		LRK54_RS15045	0.29	+0.2
3,326,830	+		LRK54_RS15045	0.29	-2.0
3,326,830	+		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	+2.2
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	-0.2
3,326,831	-		LRK54_RS15045	0.29	+0.6
3,326,831	-		LRK54_RS15045	0.29	-0.6
3,326,831	-		LRK54_RS15045	0.29	+0.3
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	+0.1
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	-0.4
3,326,831	-		LRK54_RS15045	0.29	-0.8
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	+2.2
3,326,831	-		LRK54_RS15045	0.29	+0.1
3,326,831	-		LRK54_RS15045	0.29	-0.4
3,326,831	-		LRK54_RS15045	0.29	-0.8
3,326,831	-		LRK54_RS15045	0.29	-0.7
3,326,831	-		LRK54_RS15045	0.29	-0.7
3,326,831	-		LRK54_RS15045	0.29	-0.8
3,326,831	-		LRK54_RS15045	0.29	-0.2
3,326,831	-		LRK54_RS15045	0.29	+0.2
3,326,831	-		LRK54_RS15045	0.29	+1.2
3,326,831	-		LRK54_RS15045	0.29	-0.3
3,326,831	-		LRK54_RS15045	0.29	-0.3
3,326,831	-		LRK54_RS15045	0.29	+0.1
3,326,917	+		LRK54_RS15045	0.51	+1.2
3,326,917	+		LRK54_RS15045	0.51	+0.2
3,326,917	+		LRK54_RS15045	0.51	+0.7
3,326,917	+		LRK54_RS15045	0.51	-0.8
3,326,917	+		LRK54_RS15045	0.51	-0.8
3,326,917	+		LRK54_RS15045	0.51	+1.2
3,326,917	+		LRK54_RS15045	0.51	+1.0
3,326,917	+		LRK54_RS15045	0.51	-1.7
3,326,918	-		LRK54_RS15045	0.51	+1.2
3,326,918	-		LRK54_RS15045	0.51	-0.4
3,326,918	-		LRK54_RS15045	0.51	-1.7
3,326,918	-		LRK54_RS15045	0.51	+0.2
3,326,918	-		LRK54_RS15045	0.51	+0.2
3,326,918	-		LRK54_RS15045	0.51	-0.1
3,326,993	+		LRK54_RS15045	0.71	-0.0
3,326,993	+		LRK54_RS15045	0.71	+0.8
3,326,993	+		LRK54_RS15045	0.71	-0.4
3,326,994	-		LRK54_RS15045	0.71	+2.2
3,326,994	-		LRK54_RS15045	0.71	+1.2
3,327,103	+				-0.7
3,327,103	+				-1.2
3,327,104	-				-0.4
3,327,104	-				+1.2
3,327,146	+				-0.3
3,327,147	-				-0.8
3,327,201	+				+1.5