Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06265

Experiment: 1A-T1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1A-T1
1,339,945	-				+0.9
1,339,945	-				+0.9
1,339,945	-				-0.1
1,340,031	-				-0.7
1,340,055	+				+1.9
1,340,055	+				-1.1
1,340,055	+				-0.1
1,340,055	+				+2.5
1,340,055	+				-1.4
1,340,055	+				-0.4
1,340,055	+				-0.7
1,340,055	+				-1.4
1,340,056	-				-0.1
1,340,056	-				-0.1
1,340,056	-				+0.1
1,340,056	-				-0.5
1,340,086	+				-0.4
1,340,158	-				+0.3
1,340,167	+		LRK54_RS06260	0.10	-0.1
1,340,167	+		LRK54_RS06260	0.10	+0.9
1,340,188	-		LRK54_RS06260	0.13	+2.5
1,340,213	+		LRK54_RS06260	0.17	+1.9
1,340,213	+		LRK54_RS06260	0.17	-0.7
1,340,213	+		LRK54_RS06260	0.17	-1.4
1,340,213	+		LRK54_RS06260	0.17	+0.9
1,340,213	+		LRK54_RS06260	0.17	-1.1
1,340,213	+		LRK54_RS06260	0.17	+2.5
1,340,213	+		LRK54_RS06260	0.17	+0.9
1,340,213	+		LRK54_RS06260	0.17	-1.0
1,340,213	+		LRK54_RS06260	0.17	+0.1
1,340,213	+		LRK54_RS06260	0.17	-0.7
1,340,213	+		LRK54_RS06260	0.17	+0.9
1,340,213	+		LRK54_RS06260	0.17	-0.1
1,340,213	+		LRK54_RS06260	0.17	-1.3
1,340,214	-		LRK54_RS06260	0.17	-0.1
1,340,214	-		LRK54_RS06260	0.17	-0.1
1,340,214	-		LRK54_RS06260	0.17	+0.9
1,340,214	-		LRK54_RS06260	0.17	-0.7
1,340,214	-		LRK54_RS06260	0.17	-1.4
1,340,214	-		LRK54_RS06260	0.17	+0.3
1,340,214	-		LRK54_RS06260	0.17	-0.2
1,340,214	-		LRK54_RS06260	0.17	+0.9
1,340,251	+		LRK54_RS06260	0.22	+0.9
1,340,252	-		LRK54_RS06260	0.22	-0.2
1,340,317	+		LRK54_RS06260	0.31	-1.4
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	-0.4
1,340,317	+		LRK54_RS06260	0.31	-0.1
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	-1.9
1,340,317	+		LRK54_RS06260	0.31	-0.1
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	-0.4
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	+1.9
1,340,317	+		LRK54_RS06260	0.31	+0.9
1,340,317	+		LRK54_RS06260	0.31	-1.1
1,340,317	+		LRK54_RS06260	0.31	-1.4
1,340,318	-		LRK54_RS06260	0.31	-1.7
1,340,318	-		LRK54_RS06260	0.31	+0.9
1,340,318	-		LRK54_RS06260	0.31	+0.9
1,340,402	+		LRK54_RS06260	0.42	+0.5
1,340,402	+		LRK54_RS06260	0.42	-0.1
1,340,402	+		LRK54_RS06260	0.42	-0.7
1,340,402	+		LRK54_RS06260	0.42	+0.5
1,340,402	+		LRK54_RS06260	0.42	-0.4
1,340,402	+		LRK54_RS06260	0.42	+0.4
1,340,402	+		LRK54_RS06260	0.42	+0.3
1,340,403	-		LRK54_RS06260	0.42	-1.1
1,340,403	-		LRK54_RS06260	0.42	+0.9
1,340,403	-		LRK54_RS06260	0.42	-0.1
1,340,403	-		LRK54_RS06260	0.42	-1.2
1,340,403	-		LRK54_RS06260	0.42	-0.7
1,340,506	+		LRK54_RS06260	0.56	-0.5
1,340,506	+		LRK54_RS06260	0.56	-0.7
1,340,506	+		LRK54_RS06260	0.56	-1.7
1,340,506	+		LRK54_RS06260	0.56	+0.9
1,340,506	+		LRK54_RS06260	0.56	+0.9
1,340,506	+		LRK54_RS06260	0.56	-0.7
1,340,506	+		LRK54_RS06260	0.56	+0.9
1,340,506	+		LRK54_RS06260	0.56	-1.4
1,340,507	-		LRK54_RS06260	0.56	-1.1
1,340,507	-		LRK54_RS06260	0.56	-1.0
1,340,507	-		LRK54_RS06260	0.56	+0.3
1,340,507	-		LRK54_RS06260	0.56	+0.5
1,340,507	-		LRK54_RS06260	0.56	-1.0
1,340,507	-		LRK54_RS06260	0.56	-0.4
1,340,551	-		LRK54_RS06260	0.62	+0.3
1,340,561	+		LRK54_RS06260	0.63	-0.4
1,340,561	+		LRK54_RS06260	0.63	+0.9
1,340,561	+		LRK54_RS06260	0.63	-0.1
1,340,561	+		LRK54_RS06260	0.63	+0.9
1,340,561	+		LRK54_RS06260	0.63	+0.9
1,340,561	+		LRK54_RS06260	0.63	+0.9
1,340,562	-		LRK54_RS06260	0.63	-1.6
1,340,562	-		LRK54_RS06260	0.63	+0.9
1,340,646	-		LRK54_RS06260	0.75	+0.9
1,340,658	-		LRK54_RS06260	0.76	+0.9
1,340,697	-		LRK54_RS06260	0.81	-0.1
1,340,735	+		LRK54_RS06260	0.86	-2.1
1,340,735	+		LRK54_RS06260	0.86	-0.7
1,340,755	+		LRK54_RS06260	0.89	-1.1
1,340,755	+		LRK54_RS06260	0.89	-1.5
1,340,756	-		LRK54_RS06260	0.89	+0.3
1,340,756	-		LRK54_RS06260	0.89	-0.4
1,340,756	-		LRK54_RS06260	0.89	-0.4
1,340,756	-		LRK54_RS06260	0.89	-0.7
1,340,756	-		LRK54_RS06260	0.89	-0.7
1,340,756	-		LRK54_RS06260	0.89	-1.4
1,340,756	-		LRK54_RS06260	0.89	-0.8
1,340,824	+				-0.7
1,340,825	-				-2.2
1,340,825	-				+0.9
1,340,825	-				-0.2
1,340,863	+				-2.5
1,340,959	+				-1.4
1,340,959	+				-1.9
1,340,959	+				+0.5
1,340,959	+				-0.1
1,340,959	+				+0.2
1,340,959	+				+0.9
1,340,959	+				-0.1
1,340,960	-				-0.5
1,340,960	-				+0.9
1,340,960	-				-0.5
1,340,960	-				-0.1
1,340,960	-				-1.4
1,340,960	-				-1.4
1,341,075	+		LRK54_RS06265	0.22	+0.3
1,341,075	+		LRK54_RS06265	0.22	+0.9
1,341,075	+		LRK54_RS06265	0.22	-0.7
1,341,075	+		LRK54_RS06265	0.22	+1.3
1,341,075	+		LRK54_RS06265	0.22	-2.2
1,341,075	+		LRK54_RS06265	0.22	+0.9
1,341,075	+		LRK54_RS06265	0.22	+0.1
1,341,075	+		LRK54_RS06265	0.22	-2.1
1,341,075	+		LRK54_RS06265	0.22	-0.9
1,341,075	+		LRK54_RS06265	0.22	+0.9
1,341,075	+		LRK54_RS06265	0.22	+0.3
1,341,075	+		LRK54_RS06265	0.22	-0.7
1,341,076	-		LRK54_RS06265	0.22	-0.9
1,341,076	-		LRK54_RS06265	0.22	-1.2
1,341,076	-		LRK54_RS06265	0.22	+0.3
1,341,076	-		LRK54_RS06265	0.22	-1.4
1,341,076	-		LRK54_RS06265	0.22	-0.5
1,341,076	-		LRK54_RS06265	0.22	-1.6
1,341,076	-		LRK54_RS06265	0.22	-0.1
1,341,076	-		LRK54_RS06265	0.22	-0.1
1,341,094	+		LRK54_RS06265	0.25	+0.9
1,341,095	-		LRK54_RS06265	0.25	-0.9
1,341,095	-		LRK54_RS06265	0.25	-0.7
1,341,103	+		LRK54_RS06265	0.26	-0.7
1,341,103	+		LRK54_RS06265	0.26	+0.1
1,341,103	+		LRK54_RS06265	0.26	-0.2
1,341,103	+		LRK54_RS06265	0.26	-0.7
1,341,103	+		LRK54_RS06265	0.26	-1.3
1,341,103	+		LRK54_RS06265	0.26	-0.1
1,341,103	+		LRK54_RS06265	0.26	+0.2
1,341,104	-		LRK54_RS06265	0.26	-0.1
1,341,104	-		LRK54_RS06265	0.26	+0.2
1,341,104	-		LRK54_RS06265	0.26	-0.1
1,341,104	-		LRK54_RS06265	0.26	-1.3
1,341,104	-		LRK54_RS06265	0.26	+0.5
1,341,104	-		LRK54_RS06265	0.26	-0.1
1,341,104	-		LRK54_RS06265	0.26	-0.7
1,341,104	-		LRK54_RS06265	0.26	-0.1
1,341,104	-		LRK54_RS06265	0.26	-0.1
1,341,133	+		LRK54_RS06265	0.30	-2.1
1,341,134	-		LRK54_RS06265	0.30	+0.2
1,341,134	-		LRK54_RS06265	0.30	-0.7
1,341,212	-		LRK54_RS06265	0.42	-0.8
1,341,268	+		LRK54_RS06265	0.50	-0.7
1,341,268	+		LRK54_RS06265	0.50	+0.5
1,341,268	+		LRK54_RS06265	0.50	-0.7
1,341,268	+		LRK54_RS06265	0.50	-0.1
1,341,268	+		LRK54_RS06265	0.50	+0.9
1,341,268	+		LRK54_RS06265	0.50	-0.2
1,341,268	+		LRK54_RS06265	0.50	+1.9
1,341,268	+		LRK54_RS06265	0.50	-0.1
1,341,268	+		LRK54_RS06265	0.50	+0.1
1,341,268	+		LRK54_RS06265	0.50	-1.2
1,341,268	+		LRK54_RS06265	0.50	-0.8
1,341,268	+		LRK54_RS06265	0.50	+0.5
1,341,268	+		LRK54_RS06265	0.50	+0.9
1,341,268	+		LRK54_RS06265	0.50	+0.0
1,341,268	+		LRK54_RS06265	0.50	-0.4
1,341,268	+		LRK54_RS06265	0.50	+0.6
1,341,268	+		LRK54_RS06265	0.50	-0.1
1,341,268	+		LRK54_RS06265	0.50	-0.2
1,341,268	+		LRK54_RS06265	0.50	-0.3
1,341,269	-		LRK54_RS06265	0.50	-0.4
1,341,269	-		LRK54_RS06265	0.50	+1.2
1,341,269	-		LRK54_RS06265	0.50	-0.5
1,341,269	-		LRK54_RS06265	0.50	-0.6
1,341,269	-		LRK54_RS06265	0.50	+0.3
1,341,269	-		LRK54_RS06265	0.50	-1.8
1,341,269	-		LRK54_RS06265	0.50	-0.1
1,341,269	-		LRK54_RS06265	0.50	-1.4
1,341,269	-		LRK54_RS06265	0.50	-0.4
1,341,269	-		LRK54_RS06265	0.50	-2.1
1,341,269	-		LRK54_RS06265	0.50	-1.1
1,341,269	-		LRK54_RS06265	0.50	+0.3
1,341,269	-		LRK54_RS06265	0.50	-0.7
1,341,269	-		LRK54_RS06265	0.50	+0.2
1,341,269	-		LRK54_RS06265	0.50	+0.1
1,341,269	-		LRK54_RS06265	0.50	+0.9
1,341,269	-		LRK54_RS06265	0.50	-0.2
1,341,371	+		LRK54_RS06265	0.65	-0.1
1,341,371	+		LRK54_RS06265	0.65	-0.7
1,341,372	-		LRK54_RS06265	0.65	-0.1
1,341,372	-		LRK54_RS06265	0.65	-1.4
1,341,372	-		LRK54_RS06265	0.65	+0.9
1,341,390	+		LRK54_RS06265	0.67	-1.6
1,341,390	+		LRK54_RS06265	0.67	-0.7
1,341,390	+		LRK54_RS06265	0.67	+0.4
1,341,390	+		LRK54_RS06265	0.67	+1.9
1,341,390	+		LRK54_RS06265	0.67	-0.2
1,341,391	-		LRK54_RS06265	0.67	-0.5
1,341,391	-		LRK54_RS06265	0.67	-0.8
1,341,391	-		LRK54_RS06265	0.67	-1.4
1,341,391	-		LRK54_RS06265	0.67	-2.2
1,341,391	-		LRK54_RS06265	0.67	-0.1
1,341,391	-		LRK54_RS06265	0.67	-0.4
1,341,422	+		LRK54_RS06265	0.72	-0.5
1,341,422	+		LRK54_RS06265	0.72	-2.1
1,341,422	+		LRK54_RS06265	0.72	-0.1
1,341,422	+		LRK54_RS06265	0.72	+0.9
1,341,422	+		LRK54_RS06265	0.72	+0.9
1,341,423	-		LRK54_RS06265	0.72	-1.2
1,341,423	-		LRK54_RS06265	0.72	-0.1
1,341,423	-		LRK54_RS06265	0.72	-1.7
1,341,450	-		LRK54_RS06265	0.76	+0.9
1,341,450	-		LRK54_RS06265	0.76	+0.9
1,341,450	-		LRK54_RS06265	0.76	-0.1
1,341,503	-		LRK54_RS06265	0.83	-0.1
1,341,503	-		LRK54_RS06265	0.83	+0.2
1,341,543	-		LRK54_RS06265	0.89	-0.5
1,341,543	-		LRK54_RS06265	0.89	-0.1
1,341,602	+				-1.1
1,341,602	+				+0.9
1,341,603	-				-0.3
1,341,606	+				+0.9
1,341,606	+				-1.1
1,341,606	+				-0.9
1,341,606	+				-1.2
1,341,607	-				-0.7
1,341,607	-				-0.3
1,341,607	-				+0.7
1,341,607	-				-1.4
1,341,607	-				-0.2
1,341,607	-				+0.9
1,341,607	-				-1.2
1,341,671	+				-0.1
1,341,672	-				-0.4
1,341,672	-				-2.1
1,341,672	-				-0.7
1,341,672	-				-0.4
1,341,672	-				-0.1
1,341,698	-				+0.9
1,341,698	-				-1.1
1,341,698	-				-0.1
1,341,759	+				-1.7
1,341,759	+				-1.1
1,341,759	+				+0.3
1,341,759	+				-1.9
1,341,760	-				-0.1
1,341,760	-				-0.5
1,341,760	-				+0.7
1,341,760	-				-0.7
1,341,766	-				-0.7
1,341,766	-				-0.7
1,341,766	-				-0.6
1,341,766	-				-0.1
1,341,766	-				-1.1
1,341,771	+				+1.9
1,341,772	-				-1.8
1,341,772	-				-0.7
1,341,775	+				-0.1
1,341,775	+				+0.2
1,341,784	+				-0.1
1,341,784	+				-0.1
1,341,784	+				-0.7
1,341,784	+				-0.7
1,341,784	+				+0.3
1,341,784	+				+0.9
1,341,784	+				-1.1
1,341,785	-				-0.3
1,341,785	-				-0.4
1,341,785	-				-0.5
1,341,785	-				-0.3
1,341,785	-				-0.4
1,341,785	-				+0.3
1,341,785	-				-2.1
1,341,785	-				-0.3
1,341,785	-				-0.1
1,341,785	-				+0.0
1,341,785	-				-0.1
1,341,785	-				-0.1
1,341,785	-				-0.7
1,341,800	+				+0.9
1,341,801	-				+0.3
1,341,801	-				+0.9
1,341,801	-				-0.1
1,341,801	-				+0.2
1,341,801	-				-0.4
1,341,801	-				-1.1
1,341,801	-				-1.0
1,342,188	+				-1.0
1,342,188	+				-1.1
1,342,188	+				+0.9
1,342,188	+				-0.6
1,342,189	-				-0.1
1,342,189	-				+0.3
1,342,189	-				-1.1
1,342,189	-				+1.5
1,342,189	-				-0.7
1,342,194	+				+1.6
1,342,194	+				+1.7
1,342,194	+				-0.1
1,342,194	+				-1.1
1,342,194	+				-0.1
1,342,194	+				-2.2
1,342,194	+				-0.6
1,342,195	-				-0.8
1,342,195	-				+0.9
1,342,195	-				+0.3
1,342,195	-				+0.9
1,342,195	-				-2.4
1,342,195	-				+0.9
1,342,195	-				-0.1
1,342,195	-				-1.1
1,342,195	-				-1.8
1,342,197	+		LRK54_RS06270	0.10	-0.1
1,342,198	-		LRK54_RS06270	0.10	+0.9
1,342,198	-		LRK54_RS06270	0.10	+0.2
1,342,233	+		LRK54_RS06270	0.12	-1.7
1,342,233	+		LRK54_RS06270	0.12	-1.1
1,342,233	+		LRK54_RS06270	0.12	-0.4
1,342,233	+		LRK54_RS06270	0.12	-0.7
1,342,234	-		LRK54_RS06270	0.12	-0.1
1,342,266	+		LRK54_RS06270	0.13	+0.9
1,342,267	-		LRK54_RS06270	0.13	-0.7
1,342,383	+		LRK54_RS06270	0.19	+0.0
1,342,383	+		LRK54_RS06270	0.19	-2.5
1,342,383	+		LRK54_RS06270	0.19	-0.1
1,342,383	+		LRK54_RS06270	0.19	+0.9
1,342,384	-		LRK54_RS06270	0.19	-0.7
1,342,384	-		LRK54_RS06270	0.19	+0.9
1,342,384	-		LRK54_RS06270	0.19	-1.8
1,342,384	-		LRK54_RS06270	0.19	-1.3
1,342,384	-		LRK54_RS06270	0.19	-1.1
1,342,384	-		LRK54_RS06270	0.19	+0.3
1,342,470	+		LRK54_RS06270	0.22	-1.7
1,342,471	-		LRK54_RS06270	0.23	-0.2
1,342,482	+		LRK54_RS06270	0.23	+1.9
1,342,482	+		LRK54_RS06270	0.23	-0.5
1,342,482	+		LRK54_RS06270	0.23	+1.9
1,342,482	+		LRK54_RS06270	0.23	+0.9
1,342,482	+		LRK54_RS06270	0.23	-1.1
1,342,482	+		LRK54_RS06270	0.23	-1.1
1,342,482	+		LRK54_RS06270	0.23	+0.6
1,342,482	+		LRK54_RS06270	0.23	+0.9
1,342,482	+		LRK54_RS06270	0.23	-1.1
1,342,482	+		LRK54_RS06270	0.23	-0.1
1,342,482	+		LRK54_RS06270	0.23	+0.9
1,342,483	-		LRK54_RS06270	0.23	-0.2
1,342,483	-		LRK54_RS06270	0.23	-0.1
1,342,483	-		LRK54_RS06270	0.23	+0.1
1,342,483	-		LRK54_RS06270	0.23	-0.2
1,342,483	-		LRK54_RS06270	0.23	+0.1
1,342,483	-		LRK54_RS06270	0.23	-0.4
1,342,483	-		LRK54_RS06270	0.23	+0.2
1,342,575	+		LRK54_RS06270	0.27	-0.7
1,342,575	+		LRK54_RS06270	0.27	-1.9
1,342,575	+		LRK54_RS06270	0.27	+0.0
1,342,575	+		LRK54_RS06270	0.27	-1.7
1,342,575	+		LRK54_RS06270	0.27	-0.1
1,342,576	-		LRK54_RS06270	0.27	-0.9
1,342,576	-		LRK54_RS06270	0.27	-0.1
1,342,576	-		LRK54_RS06270	0.27	-0.7
1,342,576	-		LRK54_RS06270	0.27	-0.7
1,342,576	-		LRK54_RS06270	0.27	-1.8
1,342,576	-		LRK54_RS06270	0.27	-0.5
1,342,576	-		LRK54_RS06270	0.27	-0.9
1,342,576	-		LRK54_RS06270	0.27	+0.0
1,342,581	+		LRK54_RS06270	0.28	-0.1