Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06542 and H281DRAFT_06543 are separated by 10 nucleotides H281DRAFT_06543 and H281DRAFT_06544 overlap by 4 nucleotides H281DRAFT_06544 and H281DRAFT_06545 are separated by 118 nucleotides H281DRAFT_06545 and H281DRAFT_06546 are separated by 259 nucleotides
H281DRAFT_06542: H281DRAFT_06542 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 27,345 to 29,825
_06542
H281DRAFT_06543: H281DRAFT_06543 - cytochrome b561, at 29,836 to 30,375
_06543
H281DRAFT_06544: H281DRAFT_06544 - catalase, at 30,372 to 31,466
_06544
H281DRAFT_06545: H281DRAFT_06545 - protein of unknown function (DUF4148), at 31,585 to 31,851
_06545
H281DRAFT_06546: H281DRAFT_06546 - hypothetical protein, at 32,111 to 32,842
_06546
Position (kb) 30
31
32 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 29.794 kb on - strand at 30.193 kb on + strand, within H281DRAFT_06543 at 30.193 kb on + strand, within H281DRAFT_06543 at 30.194 kb on - strand, within H281DRAFT_06543 at 30.853 kb on + strand, within H281DRAFT_06544 at 30.934 kb on + strand, within H281DRAFT_06544 at 30.934 kb on + strand, within H281DRAFT_06544 at 31.191 kb on + strand, within H281DRAFT_06544 at 31.226 kb on + strand, within H281DRAFT_06544 at 31.313 kb on + strand, within H281DRAFT_06544 at 31.314 kb on - strand, within H281DRAFT_06544 at 31.364 kb on + strand at 31.365 kb on - strand at 31.365 kb on - strand at 31.366 kb on + strand at 31.367 kb on - strand at 31.367 kb on - strand at 31.367 kb on - strand at 31.438 kb on - strand at 31.761 kb on - strand, within H281DRAFT_06545 at 31.761 kb on - strand, within H281DRAFT_06545 at 31.913 kb on + strand at 31.913 kb on + strand at 31.960 kb on - strand at 31.960 kb on - strand at 31.984 kb on + strand at 32.216 kb on + strand at 32.259 kb on - strand, within H281DRAFT_06546
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 29,794 - -0.1 30,193 + H281DRAFT_06543 0.66 -0.0 30,193 + H281DRAFT_06543 0.66 -0.4 30,194 - H281DRAFT_06543 0.66 -0.0 30,853 + H281DRAFT_06544 0.44 -0.5 30,934 + H281DRAFT_06544 0.51 +0.3 30,934 + H281DRAFT_06544 0.51 +1.7 31,191 + H281DRAFT_06544 0.75 +0.5 31,226 + H281DRAFT_06544 0.78 -0.6 31,313 + H281DRAFT_06544 0.86 -0.1 31,314 - H281DRAFT_06544 0.86 +0.0 31,364 + +0.5 31,365 - -0.4 31,365 - +0.1 31,366 + +0.2 31,367 - -1.7 31,367 - +0.6 31,367 - -0.1 31,438 - +0.1 31,761 - H281DRAFT_06545 0.66 -0.2 31,761 - H281DRAFT_06545 0.66 +0.1 31,913 + +0.6 31,913 + -0.1 31,960 - -0.6 31,960 - +0.2 31,984 + +0.2 32,216 + -0.0 32,259 - H281DRAFT_06546 0.20 -3.8
Or see this region's nucleotide sequence