Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06415 and H281DRAFT_06416 are separated by 12 nucleotides H281DRAFT_06416 and H281DRAFT_06417 are separated by 321 nucleotides H281DRAFT_06417 and H281DRAFT_06418 are separated by 325 nucleotides H281DRAFT_06418 and H281DRAFT_06419 overlap by 4 nucleotides
H281DRAFT_06415: H281DRAFT_06415 - hypothetical protein, at 15,130 to 15,894
_06415
H281DRAFT_06416: H281DRAFT_06416 - Zn-dependent alcohol dehydrogenases, class III, at 15,907 to 16,434
_06416
H281DRAFT_06417: H281DRAFT_06417 - Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family, at 16,756 to 17,805
_06417
H281DRAFT_06418: H281DRAFT_06418 - RES domain-containing protein, at 18,131 to 18,604
_06418
H281DRAFT_06419: H281DRAFT_06419 - putative toxin-antitoxin system antitoxin component, TIGR02293 family, at 18,601 to 19,029
_06419
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 15.758 kb on + strand, within H281DRAFT_06415 at 15.759 kb on - strand, within H281DRAFT_06415 at 15.810 kb on + strand, within H281DRAFT_06415 at 15.810 kb on + strand, within H281DRAFT_06415 at 15.811 kb on - strand, within H281DRAFT_06415 at 15.836 kb on - strand at 15.957 kb on + strand at 15.957 kb on + strand at 15.957 kb on + strand at 15.957 kb on + strand at 15.958 kb on - strand at 15.961 kb on - strand, within H281DRAFT_06416 at 15.961 kb on - strand, within H281DRAFT_06416 at 15.961 kb on - strand, within H281DRAFT_06416 at 15.987 kb on + strand, within H281DRAFT_06416 at 16.088 kb on - strand, within H281DRAFT_06416 at 16.101 kb on + strand, within H281DRAFT_06416 at 16.101 kb on + strand, within H281DRAFT_06416 at 16.300 kb on + strand, within H281DRAFT_06416 at 16.300 kb on + strand, within H281DRAFT_06416 at 16.300 kb on + strand, within H281DRAFT_06416 at 16.301 kb on - strand, within H281DRAFT_06416 at 16.301 kb on - strand, within H281DRAFT_06416 at 16.417 kb on + strand at 16.417 kb on + strand at 16.417 kb on + strand at 16.417 kb on + strand at 16.417 kb on + strand at 16.462 kb on + strand at 16.497 kb on + strand at 16.523 kb on + strand at 16.523 kb on + strand at 16.524 kb on - strand at 16.557 kb on + strand at 16.578 kb on + strand at 16.578 kb on + strand at 16.578 kb on + strand at 16.578 kb on + strand at 16.579 kb on - strand at 16.730 kb on - strand at 16.730 kb on - strand at 16.733 kb on + strand at 16.757 kb on + strand at 16.757 kb on + strand at 16.940 kb on - strand, within H281DRAFT_06417 at 17.018 kb on + strand, within H281DRAFT_06417 at 17.060 kb on + strand, within H281DRAFT_06417 at 17.061 kb on - strand, within H281DRAFT_06417 at 17.061 kb on - strand, within H281DRAFT_06417 at 17.081 kb on + strand, within H281DRAFT_06417 at 17.082 kb on - strand, within H281DRAFT_06417 at 17.082 kb on - strand, within H281DRAFT_06417 at 17.089 kb on + strand, within H281DRAFT_06417 at 17.089 kb on + strand, within H281DRAFT_06417 at 17.089 kb on + strand, within H281DRAFT_06417 at 17.089 kb on + strand, within H281DRAFT_06417 at 17.089 kb on + strand, within H281DRAFT_06417 at 17.090 kb on - strand, within H281DRAFT_06417 at 17.181 kb on + strand, within H281DRAFT_06417 at 17.182 kb on - strand, within H281DRAFT_06417 at 17.255 kb on + strand, within H281DRAFT_06417 at 17.541 kb on - strand, within H281DRAFT_06417 at 17.541 kb on - strand, within H281DRAFT_06417 at 17.571 kb on + strand, within H281DRAFT_06417 at 17.676 kb on - strand, within H281DRAFT_06417 at 17.900 kb on + strand at 17.901 kb on - strand at 17.901 kb on - strand at 17.901 kb on - strand at 17.901 kb on - strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.902 kb on + strand at 17.903 kb on - strand at 18.002 kb on + strand at 18.002 kb on + strand at 18.002 kb on + strand at 18.002 kb on + strand at 18.003 kb on - strand at 18.003 kb on - strand at 18.003 kb on - strand at 18.003 kb on - strand at 18.009 kb on + strand at 18.009 kb on + strand at 18.010 kb on - strand at 18.010 kb on - strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.011 kb on + strand at 18.012 kb on - strand at 18.012 kb on - strand at 18.012 kb on - strand at 18.012 kb on - strand at 18.055 kb on - strand at 18.060 kb on - strand at 18.127 kb on + strand at 18.128 kb on - strand at 18.128 kb on - strand at 18.132 kb on + strand at 18.133 kb on - strand at 18.273 kb on - strand, within H281DRAFT_06418 at 18.273 kb on - strand, within H281DRAFT_06418 at 18.273 kb on - strand, within H281DRAFT_06418 at 18.437 kb on + strand, within H281DRAFT_06418 at 18.438 kb on - strand, within H281DRAFT_06418 at 18.502 kb on - strand, within H281DRAFT_06418 at 18.572 kb on - strand at 18.572 kb on - strand at 18.572 kb on - strand at 18.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 15,758 + H281DRAFT_06415 0.82 +0.5 15,759 - H281DRAFT_06415 0.82 -1.0 15,810 + H281DRAFT_06415 0.89 -0.1 15,810 + H281DRAFT_06415 0.89 +0.3 15,811 - H281DRAFT_06415 0.89 -0.3 15,836 - +0.0 15,957 + +0.3 15,957 + -0.4 15,957 + -0.3 15,957 + -0.5 15,958 - -0.3 15,961 - H281DRAFT_06416 0.10 +0.0 15,961 - H281DRAFT_06416 0.10 +0.1 15,961 - H281DRAFT_06416 0.10 +0.4 15,987 + H281DRAFT_06416 0.15 +1.0 16,088 - H281DRAFT_06416 0.34 -0.1 16,101 + H281DRAFT_06416 0.37 -0.1 16,101 + H281DRAFT_06416 0.37 -1.2 16,300 + H281DRAFT_06416 0.74 +0.9 16,300 + H281DRAFT_06416 0.74 -0.6 16,300 + H281DRAFT_06416 0.74 +0.1 16,301 - H281DRAFT_06416 0.75 +0.4 16,301 - H281DRAFT_06416 0.75 -0.1 16,417 + -0.0 16,417 + -0.0 16,417 + +0.2 16,417 + -0.1 16,417 + +0.2 16,462 + -0.3 16,497 + -0.7 16,523 + +0.7 16,523 + +0.0 16,524 - -0.3 16,557 + -0.3 16,578 + +0.5 16,578 + -0.1 16,578 + -0.4 16,578 + +0.4 16,579 - +0.5 16,730 - +0.2 16,730 - +0.2 16,733 + +0.1 16,757 + +1.0 16,757 + -0.5 16,940 - H281DRAFT_06417 0.18 +0.5 17,018 + H281DRAFT_06417 0.25 +0.7 17,060 + H281DRAFT_06417 0.29 +0.4 17,061 - H281DRAFT_06417 0.29 +0.3 17,061 - H281DRAFT_06417 0.29 +0.1 17,081 + H281DRAFT_06417 0.31 +0.2 17,082 - H281DRAFT_06417 0.31 -0.0 17,082 - H281DRAFT_06417 0.31 +0.0 17,089 + H281DRAFT_06417 0.32 -0.5 17,089 + H281DRAFT_06417 0.32 -0.3 17,089 + H281DRAFT_06417 0.32 +0.4 17,089 + H281DRAFT_06417 0.32 +0.2 17,089 + H281DRAFT_06417 0.32 +0.0 17,090 - H281DRAFT_06417 0.32 -0.6 17,181 + H281DRAFT_06417 0.40 +0.5 17,182 - H281DRAFT_06417 0.41 +0.4 17,255 + H281DRAFT_06417 0.48 +0.1 17,541 - H281DRAFT_06417 0.75 +0.2 17,541 - H281DRAFT_06417 0.75 +0.3 17,571 + H281DRAFT_06417 0.78 +0.1 17,676 - H281DRAFT_06417 0.88 +0.5 17,900 + +0.1 17,901 - -0.2 17,901 - -0.3 17,901 - -0.5 17,901 - -0.1 17,902 + +0.6 17,902 + +0.7 17,902 + -0.3 17,902 + +0.5 17,902 + -0.3 17,902 + -0.0 17,902 + +0.2 17,903 - -0.3 18,002 + -0.5 18,002 + -0.7 18,002 + +0.4 18,002 + +0.1 18,003 - +1.0 18,003 - +0.7 18,003 - +0.1 18,003 - -0.2 18,009 + +0.2 18,009 + -0.5 18,010 - +0.3 18,010 - -0.3 18,011 + +0.4 18,011 + -0.5 18,011 + +1.0 18,011 + +0.2 18,011 + -0.1 18,011 + -0.3 18,012 - +0.3 18,012 - -0.6 18,012 - +0.8 18,012 - -0.0 18,055 - +0.4 18,060 - -0.9 18,127 + -1.5 18,128 - +0.6 18,128 - +2.8 18,132 + -0.0 18,133 - +0.4 18,273 - H281DRAFT_06418 0.30 -0.3 18,273 - H281DRAFT_06418 0.30 +0.5 18,273 - H281DRAFT_06418 0.30 +0.8 18,437 + H281DRAFT_06418 0.65 -2.0 18,438 - H281DRAFT_06418 0.65 -0.2 18,502 - H281DRAFT_06418 0.78 +0.3 18,572 - -0.1 18,572 - +0.0 18,572 - +0.7 18,618 - +0.0
Or see this region's nucleotide sequence