Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05961 and H281DRAFT_05962 overlap by 1 nucleotides H281DRAFT_05962 and H281DRAFT_05963 are separated by 165 nucleotides H281DRAFT_05963 and H281DRAFT_05964 are separated by 164 nucleotides
H281DRAFT_05961: H281DRAFT_05961 - D-3-phosphoglycerate dehydrogenase, at 102,676 to 103,623
_05961
H281DRAFT_05962: H281DRAFT_05962 - RraA famliy, at 103,623 to 104,321
_05962
H281DRAFT_05963: H281DRAFT_05963 - transcriptional regulator, IclR family, at 104,487 to 105,197
_05963
H281DRAFT_05964: H281DRAFT_05964 - D-galactonate transporter, at 105,362 to 106,666
_05964
Position (kb) 104
105
106 Strain fitness (log2 ratio) -1
0
1 at 103.792 kb on - strand, within H281DRAFT_05962 at 104.312 kb on + strand at 104.313 kb on - strand at 104.313 kb on - strand at 104.386 kb on - strand at 104.697 kb on + strand, within H281DRAFT_05963 at 104.697 kb on + strand, within H281DRAFT_05963 at 104.712 kb on + strand, within H281DRAFT_05963 at 104.712 kb on + strand, within H281DRAFT_05963 at 104.793 kb on + strand, within H281DRAFT_05963 at 104.796 kb on + strand, within H281DRAFT_05963 at 105.455 kb on - strand at 106.047 kb on + strand, within H281DRAFT_05964
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 103,792 - H281DRAFT_05962 0.24 -0.1 104,312 + -0.4 104,313 - +0.1 104,313 - +0.2 104,386 - -0.1 104,697 + H281DRAFT_05963 0.30 -1.5 104,697 + H281DRAFT_05963 0.30 -1.0 104,712 + H281DRAFT_05963 0.32 -1.5 104,712 + H281DRAFT_05963 0.32 -1.3 104,793 + H281DRAFT_05963 0.43 -1.4 104,796 + H281DRAFT_05963 0.43 -1.0 105,455 - +0.2 106,047 + H281DRAFT_05964 0.52 +0.1
Or see this region's nucleotide sequence