Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05812 and H281DRAFT_05813 overlap by 4 nucleotides H281DRAFT_05813 and H281DRAFT_05814 are separated by 201 nucleotides H281DRAFT_05814 and H281DRAFT_05815 are separated by 97 nucleotides H281DRAFT_05815 and H281DRAFT_05816 are separated by 116 nucleotides
H281DRAFT_05812: H281DRAFT_05812 - biotin-dependent carboxylase uncharacterized domain-containing protein, at 89,102 to 90,154
_05812
H281DRAFT_05813: H281DRAFT_05813 - sensor histidine kinase inhibitor, KipI family, at 90,151 to 90,804
_05813
H281DRAFT_05814: H281DRAFT_05814 - Predicted transcription regulator, contains HTH domain, MarR family, at 91,006 to 91,518
_05814
H281DRAFT_05815: H281DRAFT_05815 - 5,10-methenyltetrahydrofolate synthetase, at 91,616 to 92,158
_05815
H281DRAFT_05816: H281DRAFT_05816 - soluble lytic murein transglycosylase, at 92,275 to 94,203
_05816
Position (kb) 91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 90.160 kb on + strand at 90.160 kb on + strand at 90.288 kb on - strand, within H281DRAFT_05813 at 90.390 kb on + strand, within H281DRAFT_05813 at 90.391 kb on - strand, within H281DRAFT_05813 at 90.391 kb on - strand, within H281DRAFT_05813 at 90.391 kb on - strand, within H281DRAFT_05813 at 90.392 kb on + strand, within H281DRAFT_05813 at 90.392 kb on + strand, within H281DRAFT_05813 at 90.392 kb on + strand, within H281DRAFT_05813 at 90.393 kb on - strand, within H281DRAFT_05813 at 90.393 kb on - strand, within H281DRAFT_05813 at 90.393 kb on - strand, within H281DRAFT_05813 at 90.431 kb on + strand, within H281DRAFT_05813 at 90.431 kb on + strand, within H281DRAFT_05813 at 90.432 kb on - strand, within H281DRAFT_05813 at 90.432 kb on - strand, within H281DRAFT_05813 at 90.432 kb on - strand, within H281DRAFT_05813 at 90.525 kb on - strand, within H281DRAFT_05813 at 90.890 kb on - strand at 90.890 kb on - strand at 90.890 kb on - strand at 90.890 kb on - strand at 90.905 kb on + strand at 90.906 kb on - strand at 90.923 kb on - strand at 90.923 kb on - strand at 90.963 kb on + strand at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.247 kb on + strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.248 kb on - strand, within H281DRAFT_05814 at 91.254 kb on + strand, within H281DRAFT_05814 at 91.254 kb on + strand at 91.255 kb on - strand, within H281DRAFT_05814 at 91.255 kb on - strand, within H281DRAFT_05814 at 91.270 kb on + strand, within H281DRAFT_05814 at 91.270 kb on + strand, within H281DRAFT_05814 at 91.290 kb on - strand, within H281DRAFT_05814 at 91.290 kb on - strand, within H281DRAFT_05814 at 91.294 kb on - strand, within H281DRAFT_05814 at 91.301 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.305 kb on - strand, within H281DRAFT_05814 at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.483 kb on + strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.484 kb on - strand at 91.515 kb on - strand at 91.517 kb on - strand at 91.517 kb on - strand at 91.569 kb on + strand at 91.570 kb on - strand at 91.570 kb on - strand at 91.618 kb on - strand at 91.679 kb on + strand, within H281DRAFT_05815 at 91.679 kb on + strand, within H281DRAFT_05815 at 91.680 kb on - strand, within H281DRAFT_05815 at 91.680 kb on - strand, within H281DRAFT_05815 at 91.717 kb on - strand, within H281DRAFT_05815 at 91.842 kb on - strand, within H281DRAFT_05815 at 91.842 kb on - strand at 92.046 kb on + strand, within H281DRAFT_05815 at 92.047 kb on - strand, within H281DRAFT_05815 at 92.116 kb on + strand at 92.116 kb on + strand at 92.138 kb on + strand at 92.153 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.201 kb on + strand at 92.202 kb on - strand at 92.260 kb on + strand at 92.260 kb on + strand at 92.307 kb on + strand at 92.307 kb on + strand at 92.307 kb on + strand at 92.307 kb on + strand at 92.443 kb on + strand at 92.444 kb on - strand at 92.458 kb on + strand at 92.467 kb on + strand at 92.467 kb on + strand at 92.468 kb on - strand, within H281DRAFT_05816
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 90,160 + -2.5 90,160 + -1.9 90,288 - H281DRAFT_05813 0.21 -1.8 90,390 + H281DRAFT_05813 0.37 -1.9 90,391 - H281DRAFT_05813 0.37 -0.1 90,391 - H281DRAFT_05813 0.37 -2.9 90,391 - H281DRAFT_05813 0.37 -1.4 90,392 + H281DRAFT_05813 0.37 -0.4 90,392 + H281DRAFT_05813 0.37 -1.9 90,392 + H281DRAFT_05813 0.37 -0.5 90,393 - H281DRAFT_05813 0.37 -1.7 90,393 - H281DRAFT_05813 0.37 -0.6 90,393 - H281DRAFT_05813 0.37 -1.1 90,431 + H281DRAFT_05813 0.43 +0.9 90,431 + H281DRAFT_05813 0.43 -0.9 90,432 - H281DRAFT_05813 0.43 -2.1 90,432 - H281DRAFT_05813 0.43 -0.6 90,432 - H281DRAFT_05813 0.43 -1.1 90,525 - H281DRAFT_05813 0.57 -0.4 90,890 - -0.0 90,890 - +0.4 90,890 - +0.4 90,890 - +0.3 90,905 + -0.5 90,906 - +1.0 90,923 - +0.5 90,923 - +0.4 90,963 + -0.6 91,247 + H281DRAFT_05814 0.47 +0.4 91,247 + H281DRAFT_05814 0.47 -0.9 91,247 + H281DRAFT_05814 0.47 -0.0 91,247 + H281DRAFT_05814 0.47 -0.5 91,247 + H281DRAFT_05814 0.47 +0.8 91,248 - H281DRAFT_05814 0.47 +0.1 91,248 - H281DRAFT_05814 0.47 -0.4 91,248 - H281DRAFT_05814 0.47 -0.2 91,248 - H281DRAFT_05814 0.47 +0.0 91,248 - H281DRAFT_05814 0.47 +0.5 91,248 - H281DRAFT_05814 0.47 -0.0 91,254 + H281DRAFT_05814 0.48 -0.1 91,254 + -0.6 91,255 - H281DRAFT_05814 0.49 +0.4 91,255 - H281DRAFT_05814 0.49 +0.1 91,270 + H281DRAFT_05814 0.51 +0.9 91,270 + H281DRAFT_05814 0.51 +0.3 91,290 - H281DRAFT_05814 0.55 +0.4 91,290 - H281DRAFT_05814 0.55 -0.9 91,294 - H281DRAFT_05814 0.56 -0.1 91,301 - H281DRAFT_05814 0.58 -0.5 91,305 - H281DRAFT_05814 0.58 +0.1 91,305 - H281DRAFT_05814 0.58 -0.4 91,305 - H281DRAFT_05814 0.58 +0.2 91,483 + -0.0 91,483 + -0.1 91,483 + -0.2 91,483 + -0.0 91,483 + -0.0 91,483 + +1.1 91,484 - -0.4 91,484 - +0.8 91,484 - +0.7 91,484 - +0.6 91,515 - -0.2 91,517 - -0.0 91,517 - -1.1 91,569 + +0.5 91,570 - +0.1 91,570 - +0.2 91,618 - -0.4 91,679 + H281DRAFT_05815 0.12 -1.1 91,679 + H281DRAFT_05815 0.12 -1.2 91,680 - H281DRAFT_05815 0.12 -1.0 91,680 - H281DRAFT_05815 0.12 -0.6 91,717 - H281DRAFT_05815 0.19 -0.5 91,842 - H281DRAFT_05815 0.42 -0.9 91,842 - -0.6 92,046 + H281DRAFT_05815 0.79 -3.3 92,047 - H281DRAFT_05815 0.79 -1.7 92,116 + -1.9 92,116 + -0.1 92,138 + -1.8 92,153 + -1.4 92,201 + -1.9 92,201 + +0.1 92,201 + -1.1 92,201 + -0.9 92,201 + -2.5 92,202 - -1.3 92,260 + +0.2 92,260 + +0.1 92,307 + -0.5 92,307 + +0.1 92,307 + -0.5 92,307 + +0.6 92,443 + +0.8 92,444 - +0.3 92,458 + +0.1 92,467 + +0.7 92,467 + +0.2 92,468 - H281DRAFT_05816 0.10 +0.7
Or see this region's nucleotide sequence