Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05784 and H281DRAFT_05785 overlap by 14 nucleotides H281DRAFT_05785 and H281DRAFT_05786 overlap by 11 nucleotides H281DRAFT_05786 and H281DRAFT_05787 are separated by 236 nucleotides H281DRAFT_05787 and H281DRAFT_05788 are separated by 239 nucleotides
H281DRAFT_05784: H281DRAFT_05784 - flagellar assembly protein FliH, at 57,537 to 58,220
_05784
H281DRAFT_05785: H281DRAFT_05785 - flagellar motor switch protein FliG, at 58,207 to 59,202
_05785
H281DRAFT_05786: H281DRAFT_05786 - flagellar M-ring protein FliF, at 59,192 to 60,991
_05786
H281DRAFT_05787: H281DRAFT_05787 - flagellar hook-basal body complex protein FliE, at 61,228 to 61,578
_05787
H281DRAFT_05788: H281DRAFT_05788 - flagellar protein FliS, at 61,818 to 62,252
_05788
Position (kb) 59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 58.214 kb on + strand at 58.214 kb on + strand at 58.214 kb on + strand at 58.214 kb on + strand at 58.214 kb on + strand at 58.214 kb on + strand at 58.214 kb on + strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.215 kb on - strand at 58.544 kb on + strand, within H281DRAFT_05785 at 58.738 kb on + strand, within H281DRAFT_05785 at 58.738 kb on + strand, within H281DRAFT_05785 at 58.739 kb on - strand, within H281DRAFT_05785 at 58.979 kb on + strand, within H281DRAFT_05785 at 58.980 kb on - strand, within H281DRAFT_05785 at 59.185 kb on + strand at 59.186 kb on - strand at 59.286 kb on + strand at 59.287 kb on - strand at 59.478 kb on + strand, within H281DRAFT_05786 at 59.478 kb on + strand, within H281DRAFT_05786 at 59.479 kb on - strand, within H281DRAFT_05786 at 59.479 kb on - strand, within H281DRAFT_05786 at 59.511 kb on + strand, within H281DRAFT_05786 at 59.511 kb on + strand, within H281DRAFT_05786 at 59.512 kb on - strand, within H281DRAFT_05786 at 59.529 kb on + strand, within H281DRAFT_05786 at 59.529 kb on + strand, within H281DRAFT_05786 at 59.529 kb on + strand, within H281DRAFT_05786 at 59.529 kb on + strand, within H281DRAFT_05786 at 59.739 kb on + strand, within H281DRAFT_05786 at 59.739 kb on + strand, within H281DRAFT_05786 at 59.740 kb on - strand, within H281DRAFT_05786 at 59.740 kb on - strand, within H281DRAFT_05786 at 59.740 kb on - strand, within H281DRAFT_05786 at 59.820 kb on + strand, within H281DRAFT_05786 at 60.377 kb on + strand, within H281DRAFT_05786 at 60.377 kb on + strand, within H281DRAFT_05786 at 60.383 kb on + strand, within H281DRAFT_05786 at 60.384 kb on - strand, within H281DRAFT_05786 at 60.480 kb on + strand, within H281DRAFT_05786 at 60.481 kb on - strand, within H281DRAFT_05786 at 60.481 kb on - strand, within H281DRAFT_05786 at 60.645 kb on + strand, within H281DRAFT_05786 at 60.646 kb on - strand, within H281DRAFT_05786 at 60.724 kb on - strand, within H281DRAFT_05786 at 60.724 kb on - strand, within H281DRAFT_05786 at 61.058 kb on - strand at 61.067 kb on + strand at 61.138 kb on - strand at 61.169 kb on + strand at 61.170 kb on - strand at 61.170 kb on - strand at 61.170 kb on - strand at 61.170 kb on - strand at 61.550 kb on - strand at 61.737 kb on + strand at 61.737 kb on + strand at 61.737 kb on + strand at 61.737 kb on + strand at 61.737 kb on + strand at 61.737 kb on + strand at 61.738 kb on - strand at 61.738 kb on - strand at 61.793 kb on + strand at 61.793 kb on + strand at 61.793 kb on + strand at 61.793 kb on + strand at 61.793 kb on + strand at 61.793 kb on + strand at 61.794 kb on - strand at 61.851 kb on + strand at 61.852 kb on - strand at 61.917 kb on + strand, within H281DRAFT_05788 at 61.917 kb on + strand, within H281DRAFT_05788
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 58,214 + +0.7 58,214 + +0.7 58,214 + +1.3 58,214 + +0.9 58,214 + +1.2 58,214 + +0.8 58,214 + +0.8 58,215 - +0.6 58,215 - +0.3 58,215 - +0.9 58,215 - +0.2 58,215 - +0.4 58,215 - +1.3 58,215 - +1.0 58,215 - +0.7 58,215 - +0.9 58,215 - +1.2 58,215 - +0.8 58,215 - +1.0 58,215 - +0.8 58,544 + H281DRAFT_05785 0.34 +1.9 58,738 + H281DRAFT_05785 0.53 +1.3 58,738 + H281DRAFT_05785 0.53 +1.1 58,739 - H281DRAFT_05785 0.53 +1.7 58,979 + H281DRAFT_05785 0.78 +1.2 58,980 - H281DRAFT_05785 0.78 +1.1 59,185 + +1.3 59,186 - +0.9 59,286 + +0.4 59,287 - +1.6 59,478 + H281DRAFT_05786 0.16 +1.2 59,478 + H281DRAFT_05786 0.16 +0.5 59,479 - H281DRAFT_05786 0.16 +1.1 59,479 - H281DRAFT_05786 0.16 +1.9 59,511 + H281DRAFT_05786 0.18 +0.7 59,511 + H281DRAFT_05786 0.18 +1.2 59,512 - H281DRAFT_05786 0.18 +1.5 59,529 + H281DRAFT_05786 0.19 +0.9 59,529 + H281DRAFT_05786 0.19 +0.5 59,529 + H281DRAFT_05786 0.19 +0.7 59,529 + H281DRAFT_05786 0.19 +1.0 59,739 + H281DRAFT_05786 0.30 +0.9 59,739 + H281DRAFT_05786 0.30 +0.7 59,740 - H281DRAFT_05786 0.30 +1.0 59,740 - H281DRAFT_05786 0.30 +0.3 59,740 - H281DRAFT_05786 0.30 +1.6 59,820 + H281DRAFT_05786 0.35 +1.5 60,377 + H281DRAFT_05786 0.66 +1.4 60,377 + H281DRAFT_05786 0.66 +2.4 60,383 + H281DRAFT_05786 0.66 +0.7 60,384 - H281DRAFT_05786 0.66 +1.1 60,480 + H281DRAFT_05786 0.72 +0.5 60,481 - H281DRAFT_05786 0.72 +1.5 60,481 - H281DRAFT_05786 0.72 +1.0 60,645 + H281DRAFT_05786 0.81 +1.1 60,646 - H281DRAFT_05786 0.81 +1.2 60,724 - H281DRAFT_05786 0.85 +0.8 60,724 - H281DRAFT_05786 0.85 +1.0 61,058 - +1.3 61,067 + +1.0 61,138 - +0.8 61,169 + +0.2 61,170 - +0.6 61,170 - +0.5 61,170 - +0.6 61,170 - +0.7 61,550 - +0.7 61,737 + +0.5 61,737 + -0.0 61,737 + -0.2 61,737 + +0.4 61,737 + +0.3 61,737 + +0.7 61,738 - -1.6 61,738 - -3.1 61,793 + -0.7 61,793 + -0.5 61,793 + -0.9 61,793 + -0.3 61,793 + -0.7 61,793 + -0.3 61,794 - -2.1 61,851 + -0.5 61,852 - -4.1 61,917 + H281DRAFT_05788 0.23 -0.1 61,917 + H281DRAFT_05788 0.23 -0.3
Or see this region's nucleotide sequence