Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05766 and H281DRAFT_05767 are separated by 100 nucleotides H281DRAFT_05767 and H281DRAFT_05768 are separated by 49 nucleotides H281DRAFT_05768 and H281DRAFT_05769 are separated by 2 nucleotides
H281DRAFT_05766: H281DRAFT_05766 - flagellar basal-body rod protein FlgF, at 39,608 to 40,366
_05766
H281DRAFT_05767: H281DRAFT_05767 - flagellar basal-body rod protein FlgG, at 40,467 to 41,255
_05767
H281DRAFT_05768: H281DRAFT_05768 - flagellar L-ring protein precursor FlgH, at 41,305 to 42,003
_05768
H281DRAFT_05769: H281DRAFT_05769 - flagellar P-ring protein precursor FlgI, at 42,006 to 43,187
_05769
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1
2 at 40.360 kb on + strand at 40.361 kb on - strand at 40.415 kb on + strand at 40.415 kb on + strand at 40.415 kb on + strand at 40.416 kb on - strand at 40.416 kb on - strand at 40.416 kb on - strand at 40.416 kb on - strand at 40.454 kb on + strand at 40.454 kb on + strand at 40.467 kb on - strand at 40.482 kb on + strand at 40.483 kb on - strand at 40.483 kb on - strand at 40.483 kb on - strand at 40.484 kb on + strand at 40.602 kb on + strand at 40.602 kb on + strand, within H281DRAFT_05767 at 40.708 kb on - strand, within H281DRAFT_05767 at 40.808 kb on + strand, within H281DRAFT_05767 at 41.069 kb on + strand, within H281DRAFT_05767 at 41.271 kb on + strand at 41.275 kb on + strand at 41.275 kb on + strand at 41.276 kb on - strand at 41.286 kb on - strand at 41.617 kb on - strand, within H281DRAFT_05768 at 41.792 kb on + strand, within H281DRAFT_05768 at 41.890 kb on + strand, within H281DRAFT_05768 at 41.890 kb on + strand, within H281DRAFT_05768 at 41.891 kb on - strand, within H281DRAFT_05768 at 41.939 kb on - strand at 41.939 kb on - strand at 42.012 kb on - strand at 42.461 kb on + strand, within H281DRAFT_05769 at 42.461 kb on + strand, within H281DRAFT_05769 at 42.492 kb on + strand, within H281DRAFT_05769 at 42.492 kb on + strand, within H281DRAFT_05769 at 42.492 kb on + strand, within H281DRAFT_05769 at 42.492 kb on + strand, within H281DRAFT_05769 at 42.492 kb on + strand at 42.493 kb on - strand, within H281DRAFT_05769 at 42.566 kb on + strand, within H281DRAFT_05769 at 42.567 kb on - strand, within H281DRAFT_05769 at 42.673 kb on - strand, within H281DRAFT_05769
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 40,360 + +0.9 40,361 - +1.1 40,415 + +0.1 40,415 + +0.6 40,415 + -1.1 40,416 - +1.7 40,416 - +1.1 40,416 - +1.6 40,416 - +0.9 40,454 + +0.9 40,454 + +0.4 40,467 - +0.4 40,482 + +1.4 40,483 - +1.1 40,483 - -0.9 40,483 - +0.9 40,484 + -0.0 40,602 + +2.5 40,602 + H281DRAFT_05767 0.17 +2.5 40,708 - H281DRAFT_05767 0.31 +0.3 40,808 + H281DRAFT_05767 0.43 +1.1 41,069 + H281DRAFT_05767 0.76 +0.9 41,271 + -0.0 41,275 + -0.9 41,275 + -0.5 41,276 - +1.0 41,286 - +0.8 41,617 - H281DRAFT_05768 0.45 +1.6 41,792 + H281DRAFT_05768 0.70 -0.1 41,890 + H281DRAFT_05768 0.84 +1.0 41,890 + H281DRAFT_05768 0.84 +1.2 41,891 - H281DRAFT_05768 0.84 +1.5 41,939 - +0.5 41,939 - +1.6 42,012 - +0.9 42,461 + H281DRAFT_05769 0.38 +1.6 42,461 + H281DRAFT_05769 0.38 +1.1 42,492 + H281DRAFT_05769 0.41 +1.2 42,492 + H281DRAFT_05769 0.41 +1.1 42,492 + H281DRAFT_05769 0.41 +1.5 42,492 + H281DRAFT_05769 0.41 +1.3 42,492 + -0.1 42,493 - H281DRAFT_05769 0.41 +1.3 42,566 + H281DRAFT_05769 0.47 +1.4 42,567 - H281DRAFT_05769 0.47 +0.8 42,673 - H281DRAFT_05769 0.56 +1.5
Or see this region's nucleotide sequence