Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05470 and H281DRAFT_05471 are separated by 994 nucleotides H281DRAFT_05471 and H281DRAFT_05472 are separated by 13 nucleotides
H281DRAFT_05470: H281DRAFT_05470 - hypothetical protein, at 50,017 to 50,346
_05470
H281DRAFT_05471: H281DRAFT_05471 - pyruvate dehydrogenase (quinone), at 51,341 to 53,137
_05471
H281DRAFT_05472: H281DRAFT_05472 - L-alanine-DL-glutamate epimerase, at 53,151 to 54,257
_05472
Position (kb) 51
52
53
54 Strain fitness (log2 ratio) -1
0
1 at 50.342 kb on + strand at 50.343 kb on - strand at 50.343 kb on - strand at 50.516 kb on + strand at 50.520 kb on + strand at 50.521 kb on - strand at 50.697 kb on + strand at 50.819 kb on - strand at 51.054 kb on + strand at 51.055 kb on - strand at 51.063 kb on + strand at 51.126 kb on - strand at 51.128 kb on + strand at 51.129 kb on - strand at 51.254 kb on + strand at 51.436 kb on - strand at 51.439 kb on - strand at 51.675 kb on - strand, within H281DRAFT_05471 at 52.139 kb on + strand, within H281DRAFT_05471 at 52.148 kb on - strand, within H281DRAFT_05471 at 52.148 kb on - strand, within H281DRAFT_05471 at 52.718 kb on + strand, within H281DRAFT_05471 at 52.896 kb on - strand, within H281DRAFT_05471 at 52.896 kb on - strand, within H281DRAFT_05471 at 52.896 kb on - strand, within H281DRAFT_05471 at 52.896 kb on - strand, within H281DRAFT_05471 at 53.135 kb on + strand at 53.241 kb on + strand at 53.242 kb on - strand at 53.242 kb on - strand at 53.313 kb on + strand, within H281DRAFT_05472 at 53.314 kb on - strand, within H281DRAFT_05472 at 53.314 kb on - strand, within H281DRAFT_05472 at 54.030 kb on + strand, within H281DRAFT_05472 at 54.130 kb on + strand, within H281DRAFT_05472 at 54.130 kb on + strand, within H281DRAFT_05472 at 54.130 kb on + strand, within H281DRAFT_05472
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 50,342 + +1.0 50,343 - -0.9 50,343 - +0.5 50,516 + -0.1 50,520 + +0.2 50,521 - -0.1 50,697 + +0.2 50,819 - -0.2 51,054 + -0.1 51,055 - -0.0 51,063 + -0.1 51,126 - +0.2 51,128 + +0.0 51,129 - +0.2 51,254 + +0.4 51,436 - +0.9 51,439 - +0.1 51,675 - H281DRAFT_05471 0.19 +0.2 52,139 + H281DRAFT_05471 0.44 -0.3 52,148 - H281DRAFT_05471 0.45 -0.2 52,148 - H281DRAFT_05471 0.45 -0.7 52,718 + H281DRAFT_05471 0.77 +0.0 52,896 - H281DRAFT_05471 0.87 +0.4 52,896 - H281DRAFT_05471 0.87 -0.6 52,896 - H281DRAFT_05471 0.87 +0.7 52,896 - H281DRAFT_05471 0.87 +0.2 53,135 + +0.2 53,241 + +0.5 53,242 - +0.2 53,242 - +0.4 53,313 + H281DRAFT_05472 0.15 -0.4 53,314 - H281DRAFT_05472 0.15 -0.5 53,314 - H281DRAFT_05472 0.15 -0.2 54,030 + H281DRAFT_05472 0.79 -0.6 54,130 + H281DRAFT_05472 0.88 -0.2 54,130 + H281DRAFT_05472 0.88 -0.6 54,130 + H281DRAFT_05472 0.88 +0.0
Or see this region's nucleotide sequence