Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05429 and H281DRAFT_05430 are separated by 25 nucleotides H281DRAFT_05430 and H281DRAFT_05431 overlap by 4 nucleotides
H281DRAFT_05429: H281DRAFT_05429 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit, at 4,703 to 6,001
_05429
H281DRAFT_05430: H281DRAFT_05430 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 6,027 to 6,734
_05430
H281DRAFT_05431: H281DRAFT_05431 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 6,731 to 8,593
_05431
Position (kb) 6
7 Strain fitness (log2 ratio) -1
0
1 at 5.100 kb on + strand, within H281DRAFT_05429 at 5.112 kb on - strand, within H281DRAFT_05429 at 5.177 kb on - strand, within H281DRAFT_05429 at 5.179 kb on + strand, within H281DRAFT_05429 at 5.179 kb on + strand, within H281DRAFT_05429 at 5.180 kb on - strand, within H281DRAFT_05429 at 5.180 kb on - strand, within H281DRAFT_05429 at 5.218 kb on + strand, within H281DRAFT_05429 at 5.219 kb on - strand, within H281DRAFT_05429 at 5.358 kb on + strand, within H281DRAFT_05429 at 5.358 kb on + strand, within H281DRAFT_05429 at 5.358 kb on + strand, within H281DRAFT_05429 at 5.396 kb on - strand, within H281DRAFT_05429 at 5.627 kb on - strand, within H281DRAFT_05429 at 5.629 kb on - strand, within H281DRAFT_05429 at 5.719 kb on - strand, within H281DRAFT_05429 at 5.982 kb on + strand at 6.001 kb on + strand at 6.069 kb on - strand at 6.340 kb on + strand, within H281DRAFT_05430 at 6.340 kb on + strand, within H281DRAFT_05430 at 6.432 kb on + strand, within H281DRAFT_05430 at 6.433 kb on - strand, within H281DRAFT_05430 at 6.691 kb on + strand at 6.691 kb on + strand at 6.692 kb on - strand at 6.793 kb on - strand at 6.802 kb on + strand at 7.217 kb on + strand, within H281DRAFT_05431 at 7.217 kb on + strand, within H281DRAFT_05431 at 7.217 kb on + strand, within H281DRAFT_05431 at 7.409 kb on + strand, within H281DRAFT_05431 at 7.409 kb on + strand, within H281DRAFT_05431 at 7.526 kb on + strand, within H281DRAFT_05431 at 7.579 kb on + strand, within H281DRAFT_05431 at 7.646 kb on + strand, within H281DRAFT_05431 at 7.646 kb on + strand, within H281DRAFT_05431
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 5,100 + H281DRAFT_05429 0.31 +0.1 5,112 - H281DRAFT_05429 0.31 +0.2 5,177 - H281DRAFT_05429 0.36 +0.3 5,179 + H281DRAFT_05429 0.37 -0.5 5,179 + H281DRAFT_05429 0.37 +0.7 5,180 - H281DRAFT_05429 0.37 +0.2 5,180 - H281DRAFT_05429 0.37 +0.5 5,218 + H281DRAFT_05429 0.40 +1.2 5,219 - H281DRAFT_05429 0.40 +0.4 5,358 + H281DRAFT_05429 0.50 -0.2 5,358 + H281DRAFT_05429 0.50 +0.0 5,358 + H281DRAFT_05429 0.50 +0.2 5,396 - H281DRAFT_05429 0.53 -0.1 5,627 - H281DRAFT_05429 0.71 -0.1 5,629 - H281DRAFT_05429 0.71 +0.3 5,719 - H281DRAFT_05429 0.78 -0.2 5,982 + -0.3 6,001 + +0.2 6,069 - -0.5 6,340 + H281DRAFT_05430 0.44 -0.0 6,340 + H281DRAFT_05430 0.44 +0.3 6,432 + H281DRAFT_05430 0.57 +0.2 6,433 - H281DRAFT_05430 0.57 +1.0 6,691 + +0.1 6,691 + +0.1 6,692 - -0.1 6,793 - -0.1 6,802 + +0.2 7,217 + H281DRAFT_05431 0.26 +0.2 7,217 + H281DRAFT_05431 0.26 +0.3 7,217 + H281DRAFT_05431 0.26 -0.3 7,409 + H281DRAFT_05431 0.36 +0.4 7,409 + H281DRAFT_05431 0.36 +0.7 7,526 + H281DRAFT_05431 0.43 +0.1 7,579 + H281DRAFT_05431 0.46 -0.0 7,646 + H281DRAFT_05431 0.49 -0.4 7,646 + H281DRAFT_05431 0.49 -0.6
Or see this region's nucleotide sequence