Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05294 and H281DRAFT_05295 are separated by 123 nucleotides H281DRAFT_05295 and H281DRAFT_05296 are separated by 67 nucleotides H281DRAFT_05296 and H281DRAFT_05297 are separated by 51 nucleotides
H281DRAFT_05294: H281DRAFT_05294 - histidine ammonia-lyase, at 36,568 to 38,244
_05294
H281DRAFT_05295: H281DRAFT_05295 - transcriptional regulator, GntR family, at 38,368 to 39,234
_05295
H281DRAFT_05296: H281DRAFT_05296 - GntR family transcriptional regulator, histidine utilization repressor, at 39,302 to 40,132
_05296
H281DRAFT_05297: H281DRAFT_05297 - amino acid ABC transporter ATP-binding protein, PAAT family, at 40,184 to 41,047
_05297
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.880 kb on + strand, within H281DRAFT_05294 at 38.157 kb on + strand at 38.253 kb on + strand at 38.379 kb on + strand at 38.649 kb on - strand, within H281DRAFT_05295 at 38.950 kb on + strand at 39.028 kb on + strand, within H281DRAFT_05295 at 39.073 kb on + strand, within H281DRAFT_05295 at 39.094 kb on + strand, within H281DRAFT_05295 at 39.154 kb on - strand at 39.322 kb on + strand at 39.322 kb on + strand at 39.368 kb on + strand at 39.600 kb on + strand, within H281DRAFT_05296 at 39.988 kb on + strand, within H281DRAFT_05296 at 39.988 kb on + strand, within H281DRAFT_05296
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 37,880 + H281DRAFT_05294 0.78 +0.0 38,157 + +0.9 38,253 + +0.2 38,379 + -0.7 38,649 - H281DRAFT_05295 0.32 -0.5 38,950 + +0.0 39,028 + H281DRAFT_05295 0.76 -0.8 39,073 + H281DRAFT_05295 0.81 -0.4 39,094 + H281DRAFT_05295 0.84 +0.2 39,154 - +0.1 39,322 + -1.1 39,322 + +0.0 39,368 + +0.1 39,600 + H281DRAFT_05296 0.36 +0.3 39,988 + H281DRAFT_05296 0.83 +0.2 39,988 + H281DRAFT_05296 0.83 -0.2
Or see this region's nucleotide sequence