Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05290 and H281DRAFT_05291 are separated by 88 nucleotides H281DRAFT_05291 and H281DRAFT_05292 are separated by 13 nucleotides H281DRAFT_05292 and H281DRAFT_05293 are separated by 35 nucleotides
H281DRAFT_05290: H281DRAFT_05290 - amino acid ABC transporter substrate-binding protein, PAAT family, at 33,262 to 34,122
_05290
H281DRAFT_05291: H281DRAFT_05291 - amino acid ABC transporter membrane protein 1, PAAT family, at 34,211 to 34,933
_05291
H281DRAFT_05292: H281DRAFT_05292 - amino acid ABC transporter membrane protein 2, PAAT family, at 34,947 to 35,702
_05292
H281DRAFT_05293: H281DRAFT_05293 - amino acid ABC transporter ATP-binding protein, PAAT family, at 35,738 to 36,529
_05293
Position (kb) 34
35 Strain fitness (log2 ratio) -1
0
1 at 33.751 kb on - strand, within H281DRAFT_05290 at 33.751 kb on - strand, within H281DRAFT_05290 at 33.751 kb on - strand, within H281DRAFT_05290 at 33.782 kb on - strand, within H281DRAFT_05290 at 33.783 kb on + strand, within H281DRAFT_05290 at 33.784 kb on - strand, within H281DRAFT_05290 at 33.833 kb on - strand, within H281DRAFT_05290 at 33.904 kb on + strand, within H281DRAFT_05290 at 33.905 kb on - strand, within H281DRAFT_05290 at 34.205 kb on + strand at 34.205 kb on + strand at 34.392 kb on - strand, within H281DRAFT_05291 at 34.392 kb on - strand, within H281DRAFT_05291 at 34.401 kb on + strand, within H281DRAFT_05291 at 34.574 kb on + strand, within H281DRAFT_05291 at 34.809 kb on - strand, within H281DRAFT_05291 at 34.841 kb on + strand, within H281DRAFT_05291 at 34.842 kb on - strand, within H281DRAFT_05291 at 35.119 kb on - strand, within H281DRAFT_05292 at 35.120 kb on + strand, within H281DRAFT_05292 at 35.237 kb on + strand, within H281DRAFT_05292 at 35.237 kb on + strand, within H281DRAFT_05292 at 35.238 kb on - strand, within H281DRAFT_05292 at 35.280 kb on - strand, within H281DRAFT_05292 at 35.520 kb on + strand, within H281DRAFT_05292 at 35.559 kb on + strand, within H281DRAFT_05292 at 35.560 kb on - strand, within H281DRAFT_05292 at 35.746 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 33,751 - H281DRAFT_05290 0.57 +0.1 33,751 - H281DRAFT_05290 0.57 -0.6 33,751 - H281DRAFT_05290 0.57 -0.6 33,782 - H281DRAFT_05290 0.60 +0.0 33,783 + H281DRAFT_05290 0.61 -0.2 33,784 - H281DRAFT_05290 0.61 +0.2 33,833 - H281DRAFT_05290 0.66 -1.0 33,904 + H281DRAFT_05290 0.75 +1.0 33,905 - H281DRAFT_05290 0.75 +0.1 34,205 + -0.2 34,205 + +0.3 34,392 - H281DRAFT_05291 0.25 -0.2 34,392 - H281DRAFT_05291 0.25 +0.6 34,401 + H281DRAFT_05291 0.26 +0.1 34,574 + H281DRAFT_05291 0.50 +0.3 34,809 - H281DRAFT_05291 0.83 -0.3 34,841 + H281DRAFT_05291 0.87 +0.0 34,842 - H281DRAFT_05291 0.87 -0.0 35,119 - H281DRAFT_05292 0.23 +0.7 35,120 + H281DRAFT_05292 0.23 -0.1 35,237 + H281DRAFT_05292 0.38 +0.3 35,237 + H281DRAFT_05292 0.38 -0.6 35,238 - H281DRAFT_05292 0.38 -0.2 35,280 - H281DRAFT_05292 0.44 -0.3 35,520 + H281DRAFT_05292 0.76 -1.1 35,559 + H281DRAFT_05292 0.81 +0.3 35,560 - H281DRAFT_05292 0.81 -0.4 35,746 + +1.0
Or see this region's nucleotide sequence