Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05280

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05278 and H281DRAFT_05279 overlap by 4 nucleotidesH281DRAFT_05279 and H281DRAFT_05280 overlap by 4 nucleotidesH281DRAFT_05280 and H281DRAFT_05281 are separated by 5 nucleotidesH281DRAFT_05281 and H281DRAFT_05282 overlap by 1 nucleotides H281DRAFT_05278: H281DRAFT_05278 - malonate decarboxylase gamma subunit, at 20,630 to 21,445 _05278 H281DRAFT_05279: H281DRAFT_05279 - malonate decarboxylase beta subunit, at 21,442 to 22,329 _05279 H281DRAFT_05280: H281DRAFT_05280 - malonate decarboxylase delta subunit, at 22,326 to 22,640 _05280 H281DRAFT_05281: H281DRAFT_05281 - triphosphoribosyl-dephospho-CoA synthase, at 22,646 to 23,608 _05281 H281DRAFT_05282: H281DRAFT_05282 - malonate decarboxylase alpha subunit, at 23,608 to 25,269 _05282 Position (kb) 22 23Strain fitness (log2 ratio) -1 0 1at 21.489 kb on - strandat 21.771 kb on + strand, within H281DRAFT_05279at 23.029 kb on - strand, within H281DRAFT_05281at 23.639 kb on + strandat 23.639 kb on + strandat 23.640 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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21,489 - +0.1
21,771 + H281DRAFT_05279 0.37 -1.3
23,029 - H281DRAFT_05281 0.40 -0.4
23,639 + -0.3
23,639 + +0.5
23,640 - -0.1

Or see this region's nucleotide sequence