Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05206 and H281DRAFT_05207 are separated by 22 nucleotides H281DRAFT_05207 and H281DRAFT_05208 are separated by 159 nucleotides H281DRAFT_05208 and H281DRAFT_05209 are separated by 116 nucleotides
H281DRAFT_05206: H281DRAFT_05206 - chloride channel protein, CIC family, at 167,506 to 169,329
_05206
H281DRAFT_05207: H281DRAFT_05207 - glutathione S-transferase, at 169,352 to 170,089
_05207
H281DRAFT_05208: H281DRAFT_05208 - conserved hypothetical integral membrane protein, at 170,249 to 171,337
_05208
H281DRAFT_05209: H281DRAFT_05209 - transcriptional regulator, LysR family, at 171,454 to 172,344
_05209
Position (kb) 170
171
172 Strain fitness (log2 ratio) -1
0
1
2 at 169.405 kb on + strand at 169.530 kb on + strand, within H281DRAFT_05207 at 169.531 kb on - strand, within H281DRAFT_05207 at 169.600 kb on + strand, within H281DRAFT_05207 at 169.639 kb on - strand, within H281DRAFT_05207 at 169.714 kb on - strand, within H281DRAFT_05207 at 169.717 kb on - strand, within H281DRAFT_05207 at 169.717 kb on - strand, within H281DRAFT_05207 at 169.800 kb on + strand, within H281DRAFT_05207 at 169.800 kb on + strand, within H281DRAFT_05207 at 169.801 kb on - strand, within H281DRAFT_05207 at 169.848 kb on + strand, within H281DRAFT_05207 at 169.848 kb on + strand, within H281DRAFT_05207 at 169.848 kb on + strand, within H281DRAFT_05207 at 169.849 kb on - strand, within H281DRAFT_05207 at 169.849 kb on - strand, within H281DRAFT_05207 at 169.849 kb on - strand, within H281DRAFT_05207 at 169.849 kb on - strand, within H281DRAFT_05207 at 170.005 kb on - strand, within H281DRAFT_05207 at 170.005 kb on - strand, within H281DRAFT_05207 at 170.071 kb on - strand at 170.074 kb on - strand at 170.250 kb on + strand at 170.306 kb on + strand at 170.306 kb on + strand at 170.307 kb on - strand at 170.307 kb on - strand at 170.310 kb on + strand at 170.311 kb on - strand at 170.435 kb on - strand, within H281DRAFT_05208 at 170.548 kb on + strand, within H281DRAFT_05208 at 170.548 kb on + strand, within H281DRAFT_05208 at 170.656 kb on + strand, within H281DRAFT_05208 at 170.657 kb on - strand, within H281DRAFT_05208 at 171.370 kb on - strand at 171.386 kb on + strand at 171.390 kb on + strand at 171.391 kb on - strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.392 kb on + strand at 171.393 kb on - strand at 171.393 kb on - strand at 171.595 kb on + strand, within H281DRAFT_05209 at 171.595 kb on + strand, within H281DRAFT_05209 at 171.596 kb on - strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.694 kb on + strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.695 kb on - strand, within H281DRAFT_05209 at 171.696 kb on + strand, within H281DRAFT_05209 at 171.697 kb on - strand, within H281DRAFT_05209 at 171.763 kb on + strand, within H281DRAFT_05209 at 171.764 kb on - strand, within H281DRAFT_05209 at 171.838 kb on - strand, within H281DRAFT_05209 at 171.873 kb on + strand, within H281DRAFT_05209
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 169,405 + +2.6 169,530 + H281DRAFT_05207 0.24 +0.8 169,531 - H281DRAFT_05207 0.24 -0.1 169,600 + H281DRAFT_05207 0.34 +0.2 169,639 - H281DRAFT_05207 0.39 +0.1 169,714 - H281DRAFT_05207 0.49 -0.2 169,717 - H281DRAFT_05207 0.49 +0.7 169,717 - H281DRAFT_05207 0.49 +0.2 169,800 + H281DRAFT_05207 0.61 -0.3 169,800 + H281DRAFT_05207 0.61 +0.3 169,801 - H281DRAFT_05207 0.61 -0.8 169,848 + H281DRAFT_05207 0.67 +0.8 169,848 + H281DRAFT_05207 0.67 -0.2 169,848 + H281DRAFT_05207 0.67 +0.3 169,849 - H281DRAFT_05207 0.67 -0.8 169,849 - H281DRAFT_05207 0.67 -0.2 169,849 - H281DRAFT_05207 0.67 -0.1 169,849 - H281DRAFT_05207 0.67 +0.6 170,005 - H281DRAFT_05207 0.88 +0.7 170,005 - H281DRAFT_05207 0.88 -0.0 170,071 - +0.0 170,074 - -0.7 170,250 + -0.3 170,306 + +0.2 170,306 + +0.2 170,307 - -0.4 170,307 - -0.0 170,310 + -1.0 170,311 - +0.0 170,435 - H281DRAFT_05208 0.17 -0.1 170,548 + H281DRAFT_05208 0.27 +0.2 170,548 + H281DRAFT_05208 0.27 +0.7 170,656 + H281DRAFT_05208 0.37 +0.3 170,657 - H281DRAFT_05208 0.37 +0.3 171,370 - +0.2 171,386 + -0.6 171,390 + +0.1 171,391 - +0.1 171,392 + -1.3 171,392 + -0.5 171,392 + -0.2 171,392 + +0.2 171,392 + +0.6 171,392 + +0.0 171,392 + +0.5 171,392 + +0.3 171,392 + -0.5 171,393 - +1.0 171,393 - +0.2 171,595 + H281DRAFT_05209 0.16 +0.0 171,595 + H281DRAFT_05209 0.16 +0.3 171,596 - H281DRAFT_05209 0.16 +0.3 171,694 + H281DRAFT_05209 0.27 +0.1 171,694 + H281DRAFT_05209 0.27 -0.0 171,694 + H281DRAFT_05209 0.27 +0.1 171,694 + H281DRAFT_05209 0.27 +0.1 171,695 - H281DRAFT_05209 0.27 +0.3 171,695 - H281DRAFT_05209 0.27 +0.4 171,695 - H281DRAFT_05209 0.27 +0.2 171,695 - H281DRAFT_05209 0.27 +0.2 171,696 + H281DRAFT_05209 0.27 +0.9 171,697 - H281DRAFT_05209 0.27 +0.1 171,763 + H281DRAFT_05209 0.35 -1.6 171,764 - H281DRAFT_05209 0.35 +1.0 171,838 - H281DRAFT_05209 0.43 -0.2 171,873 + H281DRAFT_05209 0.47 -0.1
Or see this region's nucleotide sequence