Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04845 and H281DRAFT_04846 are separated by 301 nucleotides H281DRAFT_04846 and H281DRAFT_04847 are separated by 139 nucleotides
H281DRAFT_04845: H281DRAFT_04845 - dolichol-phosphate mannosyltransferase, at 286,691 to 287,821
_04845
H281DRAFT_04846: H281DRAFT_04846 - Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose), at 288,123 to 288,578
_04846
H281DRAFT_04847: H281DRAFT_04847 - mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8), at 288,718 to 290,151
_04847
Position (kb) 288
289 Strain fitness (log2 ratio) -1
0
1
2 at 287.393 kb on - strand, within H281DRAFT_04845 at 287.413 kb on - strand, within H281DRAFT_04845 at 287.457 kb on + strand, within H281DRAFT_04845 at 287.458 kb on - strand, within H281DRAFT_04845 at 287.585 kb on - strand, within H281DRAFT_04845 at 287.585 kb on - strand, within H281DRAFT_04845 at 287.585 kb on - strand, within H281DRAFT_04845 at 287.585 kb on - strand, within H281DRAFT_04845 at 287.585 kb on - strand, within H281DRAFT_04845 at 287.631 kb on + strand, within H281DRAFT_04845 at 287.632 kb on - strand, within H281DRAFT_04845 at 287.647 kb on + strand, within H281DRAFT_04845 at 287.647 kb on + strand, within H281DRAFT_04845 at 287.647 kb on + strand, within H281DRAFT_04845 at 287.648 kb on - strand, within H281DRAFT_04845 at 287.648 kb on - strand, within H281DRAFT_04845 at 287.648 kb on - strand, within H281DRAFT_04845 at 287.658 kb on - strand, within H281DRAFT_04845 at 287.737 kb on + strand at 287.756 kb on - strand at 287.756 kb on - strand at 287.889 kb on + strand at 287.889 kb on + strand at 287.913 kb on + strand at 287.929 kb on + strand at 287.929 kb on + strand at 287.929 kb on + strand at 287.930 kb on - strand at 288.027 kb on + strand at 288.027 kb on + strand at 288.028 kb on - strand at 288.028 kb on - strand at 288.117 kb on + strand at 288.118 kb on - strand at 288.118 kb on - strand at 288.305 kb on - strand, within H281DRAFT_04846 at 288.324 kb on + strand, within H281DRAFT_04846 at 288.420 kb on - strand, within H281DRAFT_04846 at 288.423 kb on + strand, within H281DRAFT_04846 at 288.468 kb on - strand, within H281DRAFT_04846 at 288.518 kb on + strand, within H281DRAFT_04846 at 288.578 kb on + strand at 288.578 kb on + strand at 288.579 kb on - strand at 288.579 kb on - strand at 288.579 kb on - strand at 288.579 kb on - strand at 288.603 kb on + strand at 288.664 kb on - strand at 288.664 kb on - strand at 288.668 kb on + strand at 288.668 kb on + strand at 288.668 kb on + strand at 288.669 kb on - strand at 288.669 kb on - strand at 288.669 kb on - strand at 288.669 kb on - strand at 288.669 kb on - strand at 288.779 kb on + strand at 288.779 kb on + strand at 288.779 kb on + strand at 288.780 kb on - strand at 288.780 kb on - strand at 288.843 kb on + strand at 288.843 kb on + strand at 288.844 kb on - strand at 288.860 kb on + strand at 288.861 kb on - strand at 288.861 kb on - strand at 288.993 kb on + strand, within H281DRAFT_04847 at 289.037 kb on + strand, within H281DRAFT_04847 at 289.037 kb on + strand, within H281DRAFT_04847 at 289.037 kb on + strand, within H281DRAFT_04847 at 289.037 kb on + strand, within H281DRAFT_04847 at 289.038 kb on - strand, within H281DRAFT_04847 at 289.038 kb on - strand, within H281DRAFT_04847 at 289.056 kb on - strand, within H281DRAFT_04847 at 289.072 kb on + strand, within H281DRAFT_04847 at 289.073 kb on - strand, within H281DRAFT_04847 at 289.073 kb on - strand, within H281DRAFT_04847 at 289.207 kb on + strand, within H281DRAFT_04847 at 289.391 kb on + strand, within H281DRAFT_04847 at 289.392 kb on - strand, within H281DRAFT_04847 at 289.398 kb on + strand, within H281DRAFT_04847 at 289.399 kb on - strand, within H281DRAFT_04847 at 289.399 kb on - strand, within H281DRAFT_04847 at 289.399 kb on - strand, within H281DRAFT_04847 at 289.399 kb on - strand, within H281DRAFT_04847 at 289.508 kb on + strand, within H281DRAFT_04847 at 289.529 kb on + strand, within H281DRAFT_04847 at 289.571 kb on + strand, within H281DRAFT_04847 at 289.571 kb on + strand, within H281DRAFT_04847 at 289.571 kb on + strand, within H281DRAFT_04847
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 287,393 - H281DRAFT_04845 0.62 +0.9 287,413 - H281DRAFT_04845 0.64 +1.2 287,457 + H281DRAFT_04845 0.68 +1.0 287,458 - H281DRAFT_04845 0.68 +1.0 287,585 - H281DRAFT_04845 0.79 +1.0 287,585 - H281DRAFT_04845 0.79 +1.5 287,585 - H281DRAFT_04845 0.79 +1.0 287,585 - H281DRAFT_04845 0.79 +2.5 287,585 - H281DRAFT_04845 0.79 +0.9 287,631 + H281DRAFT_04845 0.83 +2.4 287,632 - H281DRAFT_04845 0.83 +1.3 287,647 + H281DRAFT_04845 0.85 +0.7 287,647 + H281DRAFT_04845 0.85 +1.4 287,647 + H281DRAFT_04845 0.85 +1.2 287,648 - H281DRAFT_04845 0.85 +1.0 287,648 - H281DRAFT_04845 0.85 +1.4 287,648 - H281DRAFT_04845 0.85 +1.3 287,658 - H281DRAFT_04845 0.85 +0.9 287,737 + +0.4 287,756 - +1.6 287,756 - +1.8 287,889 + +1.2 287,889 + +1.9 287,913 + +0.6 287,929 + +0.3 287,929 + +0.9 287,929 + +1.4 287,930 - -0.2 288,027 + +1.7 288,027 + +0.7 288,028 - -0.2 288,028 - +0.3 288,117 + +0.9 288,118 - +0.8 288,118 - +0.5 288,305 - H281DRAFT_04846 0.40 -0.9 288,324 + H281DRAFT_04846 0.44 +0.8 288,420 - H281DRAFT_04846 0.65 +2.7 288,423 + H281DRAFT_04846 0.66 +1.4 288,468 - H281DRAFT_04846 0.76 +0.4 288,518 + H281DRAFT_04846 0.87 -0.2 288,578 + +1.2 288,578 + +1.3 288,579 - -0.0 288,579 - +0.1 288,579 - +0.1 288,579 - -0.9 288,603 + +0.1 288,664 - -0.2 288,664 - +0.3 288,668 + +1.0 288,668 + +1.5 288,668 + +1.6 288,669 - +0.3 288,669 - -0.3 288,669 - -0.1 288,669 - -0.5 288,669 - -1.2 288,779 + +0.6 288,779 + +0.1 288,779 + +0.8 288,780 - +0.6 288,780 - -1.6 288,843 + +0.4 288,843 + +0.7 288,844 - -0.9 288,860 + +0.1 288,861 - +0.2 288,861 - +0.7 288,993 + H281DRAFT_04847 0.19 +0.8 289,037 + H281DRAFT_04847 0.22 +0.3 289,037 + H281DRAFT_04847 0.22 +0.5 289,037 + H281DRAFT_04847 0.22 +0.5 289,037 + H281DRAFT_04847 0.22 +1.0 289,038 - H281DRAFT_04847 0.22 +0.4 289,038 - H281DRAFT_04847 0.22 -0.3 289,056 - H281DRAFT_04847 0.24 +0.5 289,072 + H281DRAFT_04847 0.25 +0.2 289,073 - H281DRAFT_04847 0.25 -0.1 289,073 - H281DRAFT_04847 0.25 +0.5 289,207 + H281DRAFT_04847 0.34 +0.4 289,391 + H281DRAFT_04847 0.47 +0.4 289,392 - H281DRAFT_04847 0.47 +0.1 289,398 + H281DRAFT_04847 0.47 +1.1 289,399 - H281DRAFT_04847 0.47 +0.5 289,399 - H281DRAFT_04847 0.47 +0.8 289,399 - H281DRAFT_04847 0.47 -0.1 289,399 - H281DRAFT_04847 0.47 +0.3 289,508 + H281DRAFT_04847 0.55 +0.2 289,529 + H281DRAFT_04847 0.57 -0.5 289,571 + H281DRAFT_04847 0.59 +0.5 289,571 + H281DRAFT_04847 0.59 +0.4 289,571 + H281DRAFT_04847 0.59 +0.5
Or see this region's nucleotide sequence