Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04788

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04787 and H281DRAFT_04788 overlap by 1 nucleotidesH281DRAFT_04788 and H281DRAFT_04789 are separated by 19 nucleotides H281DRAFT_04787: H281DRAFT_04787 - polysaccharide transporter, PST family, at 211,213 to 212,466 _04787 H281DRAFT_04788: H281DRAFT_04788 - Glycosyltransferase involved in cell wall bisynthesis, at 212,466 to 213,539 _04788 H281DRAFT_04789: H281DRAFT_04789 - hypothetical protein, at 213,559 to 214,626 _04789 Position (kb) 212 213 214Strain fitness (log2 ratio) -1 0 1at 211.732 kb on + strand, within H281DRAFT_04787at 212.275 kb on + strand, within H281DRAFT_04787at 212.439 kb on + strandat 212.578 kb on + strand, within H281DRAFT_04788at 212.791 kb on - strand, within H281DRAFT_04788at 212.791 kb on - strand, within H281DRAFT_04788at 213.560 kb on + strandat 213.880 kb on + strand, within H281DRAFT_04789at 214.291 kb on + strand, within H281DRAFT_04789at 214.367 kb on + strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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211,732 + H281DRAFT_04787 0.41 -1.3
212,275 + H281DRAFT_04787 0.85 +0.5
212,439 + -0.6
212,578 + H281DRAFT_04788 0.10 +0.2
212,791 - H281DRAFT_04788 0.30 -0.1
212,791 - H281DRAFT_04788 0.30 -0.2
213,560 + +0.4
213,880 + H281DRAFT_04789 0.30 -0.0
214,291 + H281DRAFT_04789 0.69 -0.2
214,367 + H281DRAFT_04789 0.76 +0.0
214,368 - H281DRAFT_04789 0.76 -0.2
214,368 - H281DRAFT_04789 0.76 -0.2
214,368 - H281DRAFT_04789 0.76 -0.1

Or see this region's nucleotide sequence