Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04558

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04557 and H281DRAFT_04558 are separated by 76 nucleotidesH281DRAFT_04558 and H281DRAFT_04559 are separated by 234 nucleotidesH281DRAFT_04559 and H281DRAFT_04560 are separated by 185 nucleotides H281DRAFT_04557: H281DRAFT_04557 - Sulfate permease, MFS superfamily, at 289,778 to 291,358 _04557 H281DRAFT_04558: H281DRAFT_04558 - carbonic anhydrase, at 291,435 to 292,070 _04558 H281DRAFT_04559: H281DRAFT_04559 - hypothetical protein, at 292,305 to 292,856 _04559 H281DRAFT_04560: H281DRAFT_04560 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 293,042 to 294,358 _04560 Position (kb) 291 292 293Strain fitness (log2 ratio) -1 0 1at 290.774 kb on + strand, within H281DRAFT_04557at 290.774 kb on + strand, within H281DRAFT_04557at 290.774 kb on + strandat 290.775 kb on - strand, within H281DRAFT_04557at 290.775 kb on - strand, within H281DRAFT_04557at 290.825 kb on + strand, within H281DRAFT_04557at 290.826 kb on - strand, within H281DRAFT_04557at 291.024 kb on + strand, within H281DRAFT_04557at 291.025 kb on - strand, within H281DRAFT_04557at 291.053 kb on - strand, within H281DRAFT_04557at 291.413 kb on - strandat 291.775 kb on + strand, within H281DRAFT_04558at 291.775 kb on + strand, within H281DRAFT_04558at 291.776 kb on - strand, within H281DRAFT_04558at 291.823 kb on + strand, within H281DRAFT_04558at 291.885 kb on + strand, within H281DRAFT_04558at 291.885 kb on + strand, within H281DRAFT_04558at 291.885 kb on + strand, within H281DRAFT_04558at 291.885 kb on + strand, within H281DRAFT_04558at 291.886 kb on - strand, within H281DRAFT_04558at 291.886 kb on - strand, within H281DRAFT_04558at 291.960 kb on + strand, within H281DRAFT_04558at 291.960 kb on + strand, within H281DRAFT_04558at 291.960 kb on + strand, within H281DRAFT_04558at 291.961 kb on - strand, within H281DRAFT_04558at 291.961 kb on - strand, within H281DRAFT_04558at 291.961 kb on - strand, within H281DRAFT_04558at 292.085 kb on + strandat 292.086 kb on - strandat 292.175 kb on + strandat 292.306 kb on + strandat 292.306 kb on + strandat 292.387 kb on + strand, within H281DRAFT_04559at 292.387 kb on + strandat 292.387 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.405 kb on + strand, within H281DRAFT_04559at 292.406 kb on - strand, within H281DRAFT_04559at 292.406 kb on - strand, within H281DRAFT_04559at 292.406 kb on - strand, within H281DRAFT_04559at 292.411 kb on + strand, within H281DRAFT_04559at 292.411 kb on + strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.412 kb on - strand, within H281DRAFT_04559at 292.432 kb on + strand, within H281DRAFT_04559at 292.432 kb on + strand, within H281DRAFT_04559at 292.432 kb on + strand, within H281DRAFT_04559at 292.465 kb on + strand, within H281DRAFT_04559at 292.465 kb on + strand, within H281DRAFT_04559at 292.466 kb on - strand, within H281DRAFT_04559at 292.538 kb on - strand, within H281DRAFT_04559at 292.729 kb on + strand, within H281DRAFT_04559at 292.730 kb on - strand, within H281DRAFT_04559at 292.730 kb on - strand, within H281DRAFT_04559at 292.889 kb on - strandat 292.986 kb on + strandat 292.986 kb on + strandat 292.986 kb on + strandat 292.986 kb on + strandat 292.986 kb on + strandat 292.987 kb on - strandat 292.987 kb on - strandat 292.987 kb on - strandat 292.987 kb on - strandat 293.005 kb on + strandat 293.005 kb on + strandat 293.005 kb on + strandat 293.006 kb on - strandat 293.006 kb on - strandat 293.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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290,774 + H281DRAFT_04557 0.63 +0.5
290,774 + H281DRAFT_04557 0.63 +0.2
290,774 + -1.3
290,775 - H281DRAFT_04557 0.63 +0.7
290,775 - H281DRAFT_04557 0.63 +0.4
290,825 + H281DRAFT_04557 0.66 -0.4
290,826 - H281DRAFT_04557 0.66 +0.4
291,024 + H281DRAFT_04557 0.79 +0.8
291,025 - H281DRAFT_04557 0.79 +0.3
291,053 - H281DRAFT_04557 0.81 +0.9
291,413 - +0.3
291,775 + H281DRAFT_04558 0.53 +0.2
291,775 + H281DRAFT_04558 0.53 +0.4
291,776 - H281DRAFT_04558 0.54 -0.0
291,823 + H281DRAFT_04558 0.61 +0.3
291,885 + H281DRAFT_04558 0.71 +0.2
291,885 + H281DRAFT_04558 0.71 +0.1
291,885 + H281DRAFT_04558 0.71 +0.7
291,885 + H281DRAFT_04558 0.71 +0.2
291,886 - H281DRAFT_04558 0.71 +0.1
291,886 - H281DRAFT_04558 0.71 +0.5
291,960 + H281DRAFT_04558 0.83 +0.7
291,960 + H281DRAFT_04558 0.83 +0.7
291,960 + H281DRAFT_04558 0.83 -0.3
291,961 - H281DRAFT_04558 0.83 +0.3
291,961 - H281DRAFT_04558 0.83 +0.5
291,961 - H281DRAFT_04558 0.83 +0.2
292,085 + +0.4
292,086 - +0.8
292,175 + +0.4
292,306 + +0.4
292,306 + +0.4
292,387 + H281DRAFT_04559 0.15 -0.1
292,387 + -1.5
292,387 + H281DRAFT_04559 0.15 -0.1
292,405 + H281DRAFT_04559 0.18 +0.5
292,405 + H281DRAFT_04559 0.18 -0.3
292,405 + H281DRAFT_04559 0.18 -0.2
292,405 + H281DRAFT_04559 0.18 +0.1
292,405 + H281DRAFT_04559 0.18 +0.6
292,405 + H281DRAFT_04559 0.18 +0.5
292,405 + H281DRAFT_04559 0.18 +0.2
292,406 - H281DRAFT_04559 0.18 +0.1
292,406 - H281DRAFT_04559 0.18 -0.2
292,406 - H281DRAFT_04559 0.18 -0.2
292,411 + H281DRAFT_04559 0.19 +0.4
292,411 + H281DRAFT_04559 0.19 +0.1
292,412 - H281DRAFT_04559 0.19 +0.7
292,412 - H281DRAFT_04559 0.19 +0.8
292,412 - H281DRAFT_04559 0.19 -0.0
292,412 - H281DRAFT_04559 0.19 -0.4
292,412 - H281DRAFT_04559 0.19 -0.3
292,412 - H281DRAFT_04559 0.19 +0.2
292,412 - H281DRAFT_04559 0.19 -0.0
292,412 - H281DRAFT_04559 0.19 -0.1
292,432 + H281DRAFT_04559 0.23 +0.8
292,432 + H281DRAFT_04559 0.23 +0.3
292,432 + H281DRAFT_04559 0.23 -0.5
292,465 + H281DRAFT_04559 0.29 -0.0
292,465 + H281DRAFT_04559 0.29 +0.1
292,466 - H281DRAFT_04559 0.29 -0.3
292,538 - H281DRAFT_04559 0.42 +1.0
292,729 + H281DRAFT_04559 0.77 +0.4
292,730 - H281DRAFT_04559 0.77 +0.4
292,730 - H281DRAFT_04559 0.77 -0.2
292,889 - -0.0
292,986 + +0.1
292,986 + +0.1
292,986 + +0.2
292,986 + -0.1
292,986 + -0.3
292,987 - -0.6
292,987 - +0.1
292,987 - +0.2
292,987 - -0.3
293,005 + +0.4
293,005 + +0.1
293,005 + +0.1
293,006 - -0.6
293,006 - +0.2
293,070 + +0.5

Or see this region's nucleotide sequence