Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04546 and H281DRAFT_04547 are separated by 155 nucleotides H281DRAFT_04547 and H281DRAFT_04548 are separated by 13 nucleotides H281DRAFT_04548 and H281DRAFT_04549 are separated by 16 nucleotides H281DRAFT_04549 and H281DRAFT_04550 overlap by 4 nucleotides
H281DRAFT_04546: H281DRAFT_04546 - UDP-2,3-diacylglucosamine pyrophosphatase LpxH, at 278,692 to 279,633
_04546
H281DRAFT_04547: H281DRAFT_04547 - Uncharacterized membrane protein YckC, RDD family, at 279,789 to 280,346
_04547
H281DRAFT_04548: H281DRAFT_04548 - Protein of unknown function (DUF3106), at 280,360 to 281,118
_04548
H281DRAFT_04549: H281DRAFT_04549 - Protein of unknown function (DUF3619), at 281,135 to 281,563
_04549
H281DRAFT_04550: H281DRAFT_04550 - RNA polymerase, sigma-24 subunit, RpoE, at 281,560 to 282,123
_04550
Position (kb) 280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 279.360 kb on - strand, within H281DRAFT_04546 at 279.360 kb on - strand, within H281DRAFT_04546 at 279.365 kb on + strand, within H281DRAFT_04546 at 279.365 kb on + strand, within H281DRAFT_04546 at 279.365 kb on + strand, within H281DRAFT_04546 at 279.366 kb on - strand, within H281DRAFT_04546 at 279.366 kb on - strand, within H281DRAFT_04546 at 279.366 kb on - strand, within H281DRAFT_04546 at 279.401 kb on + strand, within H281DRAFT_04546 at 279.401 kb on + strand, within H281DRAFT_04546 at 279.401 kb on + strand, within H281DRAFT_04546 at 279.402 kb on - strand, within H281DRAFT_04546 at 279.661 kb on + strand at 279.661 kb on + strand at 279.661 kb on + strand at 279.671 kb on - strand at 279.710 kb on + strand at 279.714 kb on - strand at 279.980 kb on - strand, within H281DRAFT_04547 at 280.093 kb on + strand, within H281DRAFT_04547 at 280.094 kb on - strand, within H281DRAFT_04547 at 280.222 kb on + strand, within H281DRAFT_04547 at 280.223 kb on - strand, within H281DRAFT_04547 at 280.223 kb on - strand at 281.045 kb on + strand at 281.111 kb on + strand at 281.111 kb on + strand at 281.112 kb on - strand at 281.112 kb on - strand at 281.154 kb on + strand at 281.178 kb on + strand, within H281DRAFT_04549 at 281.204 kb on + strand, within H281DRAFT_04549 at 281.205 kb on - strand, within H281DRAFT_04549 at 281.363 kb on - strand, within H281DRAFT_04549 at 281.563 kb on + strand at 281.564 kb on - strand at 281.679 kb on + strand, within H281DRAFT_04550 at 281.680 kb on - strand, within H281DRAFT_04550 at 281.680 kb on - strand, within H281DRAFT_04550 at 281.680 kb on - strand, within H281DRAFT_04550 at 281.725 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.889 kb on + strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.890 kb on - strand, within H281DRAFT_04550 at 281.940 kb on + strand, within H281DRAFT_04550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 279,360 - H281DRAFT_04546 0.71 +1.1 279,360 - H281DRAFT_04546 0.71 +0.1 279,365 + H281DRAFT_04546 0.71 +0.1 279,365 + H281DRAFT_04546 0.71 -0.2 279,365 + H281DRAFT_04546 0.71 -0.9 279,366 - H281DRAFT_04546 0.72 +0.1 279,366 - H281DRAFT_04546 0.72 -0.1 279,366 - H281DRAFT_04546 0.72 -0.0 279,401 + H281DRAFT_04546 0.75 -0.2 279,401 + H281DRAFT_04546 0.75 -0.2 279,401 + H281DRAFT_04546 0.75 -0.4 279,402 - H281DRAFT_04546 0.75 +0.5 279,661 + -0.2 279,661 + +0.1 279,661 + -0.2 279,671 - -0.0 279,710 + -0.4 279,714 - -0.0 279,980 - H281DRAFT_04547 0.34 -0.1 280,093 + H281DRAFT_04547 0.54 -0.1 280,094 - H281DRAFT_04547 0.55 -0.1 280,222 + H281DRAFT_04547 0.78 -0.0 280,223 - H281DRAFT_04547 0.78 -1.5 280,223 - +0.1 281,045 + -1.9 281,111 + -2.3 281,111 + -3.0 281,112 - -1.0 281,112 - -0.5 281,154 + +0.1 281,178 + H281DRAFT_04549 0.10 -1.0 281,204 + H281DRAFT_04549 0.16 -0.5 281,205 - H281DRAFT_04549 0.16 -1.6 281,363 - H281DRAFT_04549 0.53 -0.3 281,563 + +0.5 281,564 - +0.0 281,679 + H281DRAFT_04550 0.21 +0.3 281,680 - H281DRAFT_04550 0.21 +0.4 281,680 - H281DRAFT_04550 0.21 -0.3 281,680 - H281DRAFT_04550 0.21 +0.4 281,725 + H281DRAFT_04550 0.29 -0.3 281,889 + H281DRAFT_04550 0.58 +0.2 281,889 + H281DRAFT_04550 0.58 -0.8 281,889 + H281DRAFT_04550 0.58 -0.5 281,889 + H281DRAFT_04550 0.58 +0.8 281,889 + H281DRAFT_04550 0.58 -0.2 281,890 - H281DRAFT_04550 0.59 +0.4 281,890 - H281DRAFT_04550 0.59 -0.8 281,890 - H281DRAFT_04550 0.59 +0.3 281,890 - H281DRAFT_04550 0.59 +0.3 281,890 - H281DRAFT_04550 0.59 -0.4 281,940 + H281DRAFT_04550 0.67 +0.2
Or see this region's nucleotide sequence