Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04365 and H281DRAFT_04366 are separated by 20 nucleotides H281DRAFT_04366 and H281DRAFT_04367 are separated by 85 nucleotides H281DRAFT_04367 and H281DRAFT_04368 are separated by 143 nucleotides
H281DRAFT_04365: H281DRAFT_04365 - pyridoxine 5'-phosphate synthase, at 82,477 to 83,241
_04365
H281DRAFT_04366: H281DRAFT_04366 - holo-[acyl-carrier protein] synthase, at 83,262 to 83,687
_04366
H281DRAFT_04367: H281DRAFT_04367 - beta-N-acetylhexosaminidase, at 83,773 to 84,801
_04367
H281DRAFT_04368: H281DRAFT_04368 - two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family, at 84,945 to 86,324
_04368
Position (kb) 83
84
85 Strain fitness (log2 ratio) -1
0
1 at 83.706 kb on + strand at 83.707 kb on - strand at 83.707 kb on - strand at 83.891 kb on - strand, within H281DRAFT_04367 at 84.060 kb on + strand, within H281DRAFT_04367 at 84.061 kb on - strand, within H281DRAFT_04367 at 84.094 kb on + strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.095 kb on - strand, within H281DRAFT_04367 at 84.096 kb on + strand, within H281DRAFT_04367 at 84.164 kb on - strand, within H281DRAFT_04367 at 84.179 kb on + strand, within H281DRAFT_04367 at 84.180 kb on - strand, within H281DRAFT_04367 at 84.382 kb on + strand, within H281DRAFT_04367 at 84.382 kb on + strand, within H281DRAFT_04367 at 84.383 kb on - strand, within H281DRAFT_04367 at 84.670 kb on - strand, within H281DRAFT_04367 at 84.699 kb on + strand at 84.819 kb on + strand at 84.819 kb on + strand at 84.819 kb on + strand at 84.819 kb on + strand at 84.820 kb on - strand at 84.820 kb on - strand at 84.820 kb on - strand at 84.823 kb on + strand at 84.824 kb on - strand at 84.977 kb on - strand at 85.237 kb on + strand, within H281DRAFT_04368 at 85.237 kb on + strand, within H281DRAFT_04368 at 85.237 kb on + strand, within H281DRAFT_04368 at 85.237 kb on + strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.238 kb on - strand, within H281DRAFT_04368 at 85.686 kb on - strand, within H281DRAFT_04368 at 85.686 kb on - strand at 85.689 kb on + strand, within H281DRAFT_04368 at 85.690 kb on - strand, within H281DRAFT_04368 at 85.690 kb on - strand, within H281DRAFT_04368 at 85.690 kb on - strand, within H281DRAFT_04368
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 83,706 + -0.0 83,707 - -0.4 83,707 - +0.5 83,891 - H281DRAFT_04367 0.11 +0.6 84,060 + H281DRAFT_04367 0.28 +0.4 84,061 - H281DRAFT_04367 0.28 +0.2 84,094 + H281DRAFT_04367 0.31 +0.0 84,095 - H281DRAFT_04367 0.31 -0.2 84,095 - H281DRAFT_04367 0.31 +0.4 84,095 - H281DRAFT_04367 0.31 -1.1 84,095 - H281DRAFT_04367 0.31 -0.2 84,095 - H281DRAFT_04367 0.31 +0.2 84,095 - H281DRAFT_04367 0.31 -0.7 84,096 + H281DRAFT_04367 0.31 -1.2 84,164 - H281DRAFT_04367 0.38 -0.8 84,179 + H281DRAFT_04367 0.39 -1.5 84,180 - H281DRAFT_04367 0.40 -0.3 84,382 + H281DRAFT_04367 0.59 +0.2 84,382 + H281DRAFT_04367 0.59 +0.7 84,383 - H281DRAFT_04367 0.59 +0.8 84,670 - H281DRAFT_04367 0.87 -0.0 84,699 + +0.2 84,819 + +0.5 84,819 + -0.1 84,819 + +0.1 84,819 + +0.3 84,820 - +0.1 84,820 - +0.5 84,820 - -0.3 84,823 + +0.6 84,824 - -0.7 84,977 - +0.4 85,237 + H281DRAFT_04368 0.21 -0.5 85,237 + H281DRAFT_04368 0.21 +0.4 85,237 + H281DRAFT_04368 0.21 +0.4 85,237 + H281DRAFT_04368 0.21 -0.0 85,238 - H281DRAFT_04368 0.21 +0.4 85,238 - H281DRAFT_04368 0.21 +0.1 85,238 - H281DRAFT_04368 0.21 +0.5 85,238 - H281DRAFT_04368 0.21 +0.1 85,238 - H281DRAFT_04368 0.21 +0.3 85,686 - H281DRAFT_04368 0.54 -0.4 85,686 - +0.5 85,689 + H281DRAFT_04368 0.54 +0.2 85,690 - H281DRAFT_04368 0.54 +0.1 85,690 - H281DRAFT_04368 0.54 +0.3 85,690 - H281DRAFT_04368 0.54 +0.0
Or see this region's nucleotide sequence