Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03548 and H281DRAFT_03549 are separated by 102 nucleotides H281DRAFT_03549 and H281DRAFT_03550 are separated by 48 nucleotides
H281DRAFT_03548: H281DRAFT_03548 - H+/gluconate symporter, at 49,134 to 50,534
_03548
H281DRAFT_03549: H281DRAFT_03549 - reactive intermediate/imine deaminase, at 50,637 to 51,038
_03549
H281DRAFT_03550: H281DRAFT_03550 - two-component system, NarL family, capsular synthesis sensor histidine kinase RcsC, at 51,087 to 54,605
_03550
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1 at 49.767 kb on + strand, within H281DRAFT_03548 at 49.767 kb on + strand, within H281DRAFT_03548 at 49.911 kb on + strand, within H281DRAFT_03548 at 49.911 kb on + strand, within H281DRAFT_03548 at 49.911 kb on + strand, within H281DRAFT_03548 at 49.911 kb on + strand, within H281DRAFT_03548 at 49.911 kb on + strand, within H281DRAFT_03548 at 49.913 kb on + strand, within H281DRAFT_03548 at 50.115 kb on - strand, within H281DRAFT_03548 at 50.127 kb on + strand, within H281DRAFT_03548 at 50.127 kb on + strand, within H281DRAFT_03548 at 50.328 kb on - strand, within H281DRAFT_03548 at 50.394 kb on - strand, within H281DRAFT_03548 at 50.449 kb on - strand at 50.512 kb on - strand at 50.514 kb on + strand at 50.532 kb on + strand at 50.788 kb on + strand, within H281DRAFT_03549 at 50.904 kb on + strand, within H281DRAFT_03549 at 50.934 kb on + strand, within H281DRAFT_03549 at 50.935 kb on - strand, within H281DRAFT_03549 at 51.201 kb on + strand at 51.202 kb on - strand at 51.202 kb on - strand at 51.209 kb on + strand at 51.209 kb on + strand at 51.209 kb on + strand at 51.315 kb on + strand at 51.658 kb on - strand, within H281DRAFT_03550 at 51.957 kb on + strand, within H281DRAFT_03550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 49,767 + H281DRAFT_03548 0.45 +0.4 49,767 + H281DRAFT_03548 0.45 +0.4 49,911 + H281DRAFT_03548 0.55 +0.0 49,911 + H281DRAFT_03548 0.55 -1.0 49,911 + H281DRAFT_03548 0.55 -0.2 49,911 + H281DRAFT_03548 0.55 +0.3 49,911 + H281DRAFT_03548 0.55 -0.1 49,913 + H281DRAFT_03548 0.56 -0.2 50,115 - H281DRAFT_03548 0.70 -0.1 50,127 + H281DRAFT_03548 0.71 -0.2 50,127 + H281DRAFT_03548 0.71 +0.2 50,328 - H281DRAFT_03548 0.85 +0.4 50,394 - H281DRAFT_03548 0.90 -0.9 50,449 - +0.0 50,512 - +0.0 50,514 + -0.3 50,532 + +0.1 50,788 + H281DRAFT_03549 0.38 -0.0 50,904 + H281DRAFT_03549 0.66 +0.8 50,934 + H281DRAFT_03549 0.74 -0.4 50,935 - H281DRAFT_03549 0.74 -0.7 51,201 + +0.1 51,202 - -0.5 51,202 - +0.8 51,209 + +0.3 51,209 + +0.4 51,209 + -0.3 51,315 + -0.4 51,658 - H281DRAFT_03550 0.16 -0.1 51,957 + H281DRAFT_03550 0.25 +0.7
Or see this region's nucleotide sequence