Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03139 and H281DRAFT_03140 are separated by 210 nucleotides H281DRAFT_03140 and H281DRAFT_03141 are separated by 82 nucleotides
H281DRAFT_03139: H281DRAFT_03139 - membrane protein, at 176,316 to 177,641
_03139
H281DRAFT_03140: H281DRAFT_03140 - Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC, at 177,852 to 178,391
_03140
H281DRAFT_03141: H281DRAFT_03141 - sulfate permease, SulP family, at 178,474 to 179,961
_03141
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 176.909 kb on - strand, within H281DRAFT_03139 at 177.082 kb on + strand, within H281DRAFT_03139 at 177.224 kb on + strand, within H281DRAFT_03139 at 177.225 kb on - strand, within H281DRAFT_03139 at 177.225 kb on - strand, within H281DRAFT_03139 at 177.225 kb on - strand, within H281DRAFT_03139 at 177.254 kb on + strand, within H281DRAFT_03139 at 177.255 kb on - strand, within H281DRAFT_03139 at 177.661 kb on - strand at 177.747 kb on + strand at 177.747 kb on + strand at 177.748 kb on - strand at 177.748 kb on - strand at 177.749 kb on + strand at 177.750 kb on - strand at 177.750 kb on - strand at 177.811 kb on + strand at 177.827 kb on - strand at 177.835 kb on + strand at 177.835 kb on + strand at 177.836 kb on - strand at 177.836 kb on - strand at 177.836 kb on - strand at 177.842 kb on - strand at 177.842 kb on - strand at 178.040 kb on + strand, within H281DRAFT_03140 at 178.041 kb on - strand, within H281DRAFT_03140 at 178.041 kb on - strand, within H281DRAFT_03140 at 178.057 kb on - strand, within H281DRAFT_03140 at 178.080 kb on + strand, within H281DRAFT_03140 at 178.080 kb on + strand, within H281DRAFT_03140 at 178.080 kb on + strand, within H281DRAFT_03140 at 178.081 kb on - strand, within H281DRAFT_03140 at 178.218 kb on - strand, within H281DRAFT_03140 at 178.516 kb on - strand at 178.516 kb on - strand at 178.718 kb on + strand, within H281DRAFT_03141 at 178.718 kb on + strand, within H281DRAFT_03141 at 178.719 kb on - strand, within H281DRAFT_03141 at 178.719 kb on - strand, within H281DRAFT_03141 at 178.719 kb on - strand, within H281DRAFT_03141 at 178.719 kb on - strand, within H281DRAFT_03141 at 178.719 kb on - strand, within H281DRAFT_03141 at 178.725 kb on + strand, within H281DRAFT_03141 at 178.725 kb on + strand, within H281DRAFT_03141 at 179.003 kb on + strand, within H281DRAFT_03141 at 179.003 kb on + strand, within H281DRAFT_03141 at 179.004 kb on - strand, within H281DRAFT_03141 at 179.249 kb on + strand, within H281DRAFT_03141 at 179.249 kb on + strand, within H281DRAFT_03141 at 179.352 kb on + strand, within H281DRAFT_03141
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 176,909 - H281DRAFT_03139 0.45 -0.2 177,082 + H281DRAFT_03139 0.58 +0.2 177,224 + H281DRAFT_03139 0.68 +0.2 177,225 - H281DRAFT_03139 0.69 -0.6 177,225 - H281DRAFT_03139 0.69 -0.3 177,225 - H281DRAFT_03139 0.69 +0.3 177,254 + H281DRAFT_03139 0.71 -0.5 177,255 - H281DRAFT_03139 0.71 +0.2 177,661 - -1.1 177,747 + +0.2 177,747 + +0.9 177,748 - +0.1 177,748 - -0.5 177,749 + -0.1 177,750 - -0.7 177,750 - +0.1 177,811 + -0.5 177,827 - -1.9 177,835 + +0.3 177,835 + +0.0 177,836 - +0.7 177,836 - -0.3 177,836 - -0.5 177,842 - +0.4 177,842 - -0.3 178,040 + H281DRAFT_03140 0.35 -1.1 178,041 - H281DRAFT_03140 0.35 +0.7 178,041 - H281DRAFT_03140 0.35 -0.3 178,057 - H281DRAFT_03140 0.38 +0.2 178,080 + H281DRAFT_03140 0.42 +0.2 178,080 + H281DRAFT_03140 0.42 -0.3 178,080 + H281DRAFT_03140 0.42 -0.7 178,081 - H281DRAFT_03140 0.42 +0.5 178,218 - H281DRAFT_03140 0.68 +0.1 178,516 - +0.0 178,516 - -0.3 178,718 + H281DRAFT_03141 0.16 -0.3 178,718 + H281DRAFT_03141 0.16 -0.4 178,719 - H281DRAFT_03141 0.16 -0.3 178,719 - H281DRAFT_03141 0.16 +1.1 178,719 - H281DRAFT_03141 0.16 -2.1 178,719 - H281DRAFT_03141 0.16 +0.4 178,719 - H281DRAFT_03141 0.16 -0.6 178,725 + H281DRAFT_03141 0.17 -0.3 178,725 + H281DRAFT_03141 0.17 -0.4 179,003 + H281DRAFT_03141 0.36 -0.2 179,003 + H281DRAFT_03141 0.36 -0.4 179,004 - H281DRAFT_03141 0.36 -0.3 179,249 + H281DRAFT_03141 0.52 -0.3 179,249 + H281DRAFT_03141 0.52 +0.1 179,352 + H281DRAFT_03141 0.59 +0.5
Or see this region's nucleotide sequence