Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03099 and H281DRAFT_03100 are separated by 2 nucleotides H281DRAFT_03100 and H281DRAFT_03101 are separated by 127 nucleotides H281DRAFT_03101 and H281DRAFT_03102 are separated by 253 nucleotides
H281DRAFT_03099: H281DRAFT_03099 - H+/Cl- antiporter ClcA, at 132,718 to 134,517
_03099
H281DRAFT_03100: H281DRAFT_03100 - DNA-binding transcriptional regulator, MarR family, at 134,520 to 134,936
_03100
H281DRAFT_03101: H281DRAFT_03101 - CBS domain-containing membrane protein, at 135,064 to 136,230
_03101
H281DRAFT_03102: H281DRAFT_03102 - cyclopropane-fatty-acyl-phospholipid synthase, at 136,484 to 137,830
_03102
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1
2 at 134.319 kb on + strand, within H281DRAFT_03099 at 134.319 kb on + strand, within H281DRAFT_03099 at 134.807 kb on - strand, within H281DRAFT_03100 at 134.820 kb on - strand, within H281DRAFT_03100 at 134.910 kb on - strand at 135.307 kb on + strand, within H281DRAFT_03101 at 135.309 kb on + strand, within H281DRAFT_03101 at 135.311 kb on + strand, within H281DRAFT_03101 at 135.311 kb on + strand, within H281DRAFT_03101 at 135.312 kb on - strand, within H281DRAFT_03101 at 135.312 kb on - strand, within H281DRAFT_03101 at 136.335 kb on - strand at 136.554 kb on + strand at 136.555 kb on - strand at 136.560 kb on + strand at 136.561 kb on - strand at 136.710 kb on + strand, within H281DRAFT_03102 at 136.889 kb on + strand, within H281DRAFT_03102 at 137.215 kb on + strand, within H281DRAFT_03102
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 134,319 + H281DRAFT_03099 0.89 -1.4 134,319 + H281DRAFT_03099 0.89 -1.7 134,807 - H281DRAFT_03100 0.69 -0.6 134,820 - H281DRAFT_03100 0.72 -0.3 134,910 - +0.2 135,307 + H281DRAFT_03101 0.21 +0.7 135,309 + H281DRAFT_03101 0.21 +0.4 135,311 + H281DRAFT_03101 0.21 -0.3 135,311 + H281DRAFT_03101 0.21 +0.3 135,312 - H281DRAFT_03101 0.21 -0.2 135,312 - H281DRAFT_03101 0.21 +2.2 136,335 - +0.3 136,554 + +0.3 136,555 - +0.6 136,560 + -1.1 136,561 - +0.9 136,710 + H281DRAFT_03102 0.17 -0.1 136,889 + H281DRAFT_03102 0.30 +0.4 137,215 + H281DRAFT_03102 0.54 +0.6
Or see this region's nucleotide sequence