Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03082 and H281DRAFT_03083 are separated by 93 nucleotides H281DRAFT_03083 and H281DRAFT_03084 are separated by 348 nucleotides H281DRAFT_03084 and H281DRAFT_03085 are separated by 213 nucleotides H281DRAFT_03085 and H281DRAFT_03086 are separated by 115 nucleotides
H281DRAFT_03082: H281DRAFT_03082 - transcriptional regulator, LysR family, at 111,216 to 112,130
_03082
H281DRAFT_03083: H281DRAFT_03083 - Redoxin, at 112,224 to 112,775
_03083
H281DRAFT_03084: H281DRAFT_03084 - Cytochrome c biogenesis protein CcdA, at 113,124 to 114,920
_03084
H281DRAFT_03085: H281DRAFT_03085 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 115,134 to 115,526
_03085
H281DRAFT_03086: H281DRAFT_03086 - protein of unknown function (DUF4410), at 115,642 to 116,409
_03086
Position (kb) 113
114
115 Strain fitness (log2 ratio) -2
-1
0
1 at 112.349 kb on + strand, within H281DRAFT_03083 at 112.551 kb on - strand at 112.558 kb on + strand, within H281DRAFT_03083 at 112.559 kb on - strand, within H281DRAFT_03083 at 112.559 kb on - strand, within H281DRAFT_03083 at 112.559 kb on - strand, within H281DRAFT_03083 at 112.559 kb on - strand, within H281DRAFT_03083 at 112.791 kb on + strand at 113.062 kb on + strand at 113.063 kb on - strand at 113.134 kb on + strand at 113.917 kb on + strand, within H281DRAFT_03084 at 113.917 kb on + strand, within H281DRAFT_03084 at 113.918 kb on - strand, within H281DRAFT_03084 at 114.066 kb on + strand, within H281DRAFT_03084 at 114.089 kb on + strand, within H281DRAFT_03084 at 114.282 kb on + strand, within H281DRAFT_03084 at 114.283 kb on - strand, within H281DRAFT_03084 at 114.283 kb on - strand, within H281DRAFT_03084 at 114.298 kb on - strand, within H281DRAFT_03084 at 114.558 kb on + strand, within H281DRAFT_03084 at 114.822 kb on + strand at 114.908 kb on + strand at 114.908 kb on + strand at 114.909 kb on - strand at 114.909 kb on - strand at 114.909 kb on - strand at 115.106 kb on + strand at 115.106 kb on + strand at 115.209 kb on + strand, within H281DRAFT_03085 at 115.210 kb on - strand, within H281DRAFT_03085 at 115.228 kb on + strand, within H281DRAFT_03085 at 115.253 kb on + strand, within H281DRAFT_03085 at 115.254 kb on - strand, within H281DRAFT_03085 at 115.304 kb on - strand, within H281DRAFT_03085 at 115.360 kb on - strand, within H281DRAFT_03085 at 115.368 kb on - strand, within H281DRAFT_03085 at 115.373 kb on + strand, within H281DRAFT_03085 at 115.807 kb on - strand, within H281DRAFT_03086 at 115.917 kb on + strand, within H281DRAFT_03086 at 115.919 kb on + strand, within H281DRAFT_03086 at 115.919 kb on + strand, within H281DRAFT_03086
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 112,349 + H281DRAFT_03083 0.23 -0.1 112,551 - +0.2 112,558 + H281DRAFT_03083 0.61 +0.3 112,559 - H281DRAFT_03083 0.61 -0.3 112,559 - H281DRAFT_03083 0.61 -0.1 112,559 - H281DRAFT_03083 0.61 -1.1 112,559 - H281DRAFT_03083 0.61 -0.6 112,791 + -0.0 113,062 + -0.2 113,063 - +1.2 113,134 + +0.0 113,917 + H281DRAFT_03084 0.44 +0.1 113,917 + H281DRAFT_03084 0.44 +0.2 113,918 - H281DRAFT_03084 0.44 -0.2 114,066 + H281DRAFT_03084 0.52 +0.0 114,089 + H281DRAFT_03084 0.54 +0.9 114,282 + H281DRAFT_03084 0.64 +0.3 114,283 - H281DRAFT_03084 0.64 -0.2 114,283 - H281DRAFT_03084 0.64 -0.1 114,298 - H281DRAFT_03084 0.65 -0.7 114,558 + H281DRAFT_03084 0.80 +0.2 114,822 + -0.7 114,908 + -0.8 114,908 + -0.1 114,909 - +0.4 114,909 - +0.3 114,909 - -0.2 115,106 + -0.2 115,106 + -0.7 115,209 + H281DRAFT_03085 0.19 +1.2 115,210 - H281DRAFT_03085 0.19 -0.2 115,228 + H281DRAFT_03085 0.24 +0.3 115,253 + H281DRAFT_03085 0.30 +0.1 115,254 - H281DRAFT_03085 0.31 +0.1 115,304 - H281DRAFT_03085 0.43 +1.3 115,360 - H281DRAFT_03085 0.58 -1.0 115,368 - H281DRAFT_03085 0.60 -2.3 115,373 + H281DRAFT_03085 0.61 +0.5 115,807 - H281DRAFT_03086 0.21 -0.8 115,917 + H281DRAFT_03086 0.36 -0.5 115,919 + H281DRAFT_03086 0.36 +0.9 115,919 + H281DRAFT_03086 0.36 -0.3
Or see this region's nucleotide sequence