Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02502 and H281DRAFT_02503 overlap by 24 nucleotides H281DRAFT_02503 and H281DRAFT_02504 are separated by 143 nucleotides H281DRAFT_02504 and H281DRAFT_02505 are separated by 222 nucleotides
H281DRAFT_02502: H281DRAFT_02502 - transcriptional regulator, LysR family, at 79,694 to 80,626
_02502
H281DRAFT_02503: H281DRAFT_02503 - Peroxiredoxin, at 80,603 to 81,325
_02503
H281DRAFT_02504: H281DRAFT_02504 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 81,469 to 82,029
_02504
H281DRAFT_02505: H281DRAFT_02505 - hypothetical protein, at 82,252 to 82,653
_02505
Position (kb) 80
81
82 Strain fitness (log2 ratio) -1
0
1 at 79.650 kb on - strand at 79.722 kb on - strand at 79.890 kb on - strand, within H281DRAFT_02502 at 80.204 kb on + strand, within H281DRAFT_02502 at 80.205 kb on - strand, within H281DRAFT_02502 at 80.245 kb on - strand, within H281DRAFT_02502 at 80.719 kb on - strand, within H281DRAFT_02503 at 80.770 kb on - strand, within H281DRAFT_02503 at 81.210 kb on - strand, within H281DRAFT_02503 at 81.210 kb on - strand, within H281DRAFT_02503 at 81.545 kb on + strand, within H281DRAFT_02504 at 81.546 kb on - strand at 81.665 kb on - strand, within H281DRAFT_02504 at 82.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 79,650 - +0.1 79,722 - -1.5 79,890 - H281DRAFT_02502 0.21 +0.6 80,204 + H281DRAFT_02502 0.55 -0.1 80,205 - H281DRAFT_02502 0.55 +0.4 80,245 - H281DRAFT_02502 0.59 -0.2 80,719 - H281DRAFT_02503 0.16 +1.2 80,770 - H281DRAFT_02503 0.23 +0.5 81,210 - H281DRAFT_02503 0.84 -0.1 81,210 - H281DRAFT_02503 0.84 +0.2 81,545 + H281DRAFT_02504 0.14 +0.5 81,546 - -0.0 81,665 - H281DRAFT_02504 0.35 +0.2 82,011 - +0.1
Or see this region's nucleotide sequence