Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02373 and H281DRAFT_02374 are separated by 101 nucleotides H281DRAFT_02374 and H281DRAFT_02375 are separated by 278 nucleotides
H281DRAFT_02373: H281DRAFT_02373 - methylmalonate-semialdehyde dehydrogenase [acylating], at 533,853 to 535,391
_02373
H281DRAFT_02374: H281DRAFT_02374 - choline dehydrogenase, at 535,493 to 537,205
_02374
H281DRAFT_02375: H281DRAFT_02375 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 537,484 to 538,263
_02375
Position (kb) 535
536
537
538 Strain fitness (log2 ratio) -2
-1
0
1 at 534.512 kb on + strand, within H281DRAFT_02373 at 534.773 kb on + strand, within H281DRAFT_02373 at 534.774 kb on - strand, within H281DRAFT_02373 at 535.012 kb on + strand, within H281DRAFT_02373 at 535.012 kb on + strand, within H281DRAFT_02373 at 535.012 kb on + strand, within H281DRAFT_02373 at 535.013 kb on - strand, within H281DRAFT_02373 at 535.023 kb on - strand, within H281DRAFT_02373 at 535.023 kb on - strand, within H281DRAFT_02373 at 535.033 kb on - strand, within H281DRAFT_02373 at 535.060 kb on + strand, within H281DRAFT_02373 at 535.061 kb on - strand, within H281DRAFT_02373 at 535.308 kb on + strand at 535.308 kb on + strand at 535.319 kb on + strand at 535.319 kb on + strand at 535.320 kb on - strand at 535.349 kb on + strand at 535.390 kb on - strand at 535.390 kb on - strand at 535.390 kb on - strand at 535.457 kb on + strand at 535.462 kb on - strand at 535.653 kb on - strand at 535.718 kb on + strand, within H281DRAFT_02374 at 535.720 kb on + strand, within H281DRAFT_02374 at 535.721 kb on - strand, within H281DRAFT_02374 at 535.814 kb on + strand, within H281DRAFT_02374 at 535.814 kb on + strand, within H281DRAFT_02374 at 535.814 kb on + strand, within H281DRAFT_02374 at 535.815 kb on - strand, within H281DRAFT_02374 at 535.815 kb on - strand, within H281DRAFT_02374 at 535.815 kb on - strand, within H281DRAFT_02374 at 535.816 kb on + strand, within H281DRAFT_02374 at 535.816 kb on + strand, within H281DRAFT_02374 at 535.817 kb on - strand, within H281DRAFT_02374 at 535.838 kb on + strand, within H281DRAFT_02374 at 536.252 kb on + strand, within H281DRAFT_02374 at 536.336 kb on - strand, within H281DRAFT_02374 at 536.370 kb on + strand, within H281DRAFT_02374 at 536.433 kb on - strand, within H281DRAFT_02374 at 536.461 kb on + strand, within H281DRAFT_02374 at 536.620 kb on - strand, within H281DRAFT_02374 at 536.620 kb on - strand, within H281DRAFT_02374 at 536.768 kb on + strand, within H281DRAFT_02374 at 536.768 kb on + strand, within H281DRAFT_02374 at 536.769 kb on - strand, within H281DRAFT_02374 at 536.769 kb on - strand, within H281DRAFT_02374 at 536.772 kb on + strand, within H281DRAFT_02374 at 536.773 kb on - strand, within H281DRAFT_02374 at 536.773 kb on - strand, within H281DRAFT_02374 at 537.016 kb on + strand, within H281DRAFT_02374 at 537.062 kb on - strand at 537.080 kb on - strand at 537.080 kb on - strand at 537.255 kb on + strand at 537.451 kb on + strand at 537.464 kb on + strand at 537.762 kb on - strand, within H281DRAFT_02375 at 538.181 kb on - strand, within H281DRAFT_02375 at 538.181 kb on - strand, within H281DRAFT_02375 at 538.181 kb on - strand, within H281DRAFT_02375
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 534,512 + H281DRAFT_02373 0.43 -0.9 534,773 + H281DRAFT_02373 0.60 -1.2 534,774 - H281DRAFT_02373 0.60 -1.1 535,012 + H281DRAFT_02373 0.75 -1.3 535,012 + H281DRAFT_02373 0.75 -1.5 535,012 + H281DRAFT_02373 0.75 -1.7 535,013 - H281DRAFT_02373 0.75 -0.9 535,023 - H281DRAFT_02373 0.76 -2.3 535,023 - H281DRAFT_02373 0.76 -1.7 535,033 - H281DRAFT_02373 0.77 -0.7 535,060 + H281DRAFT_02373 0.78 -1.6 535,061 - H281DRAFT_02373 0.78 -2.3 535,308 + -1.2 535,308 + -0.6 535,319 + -2.5 535,319 + -1.5 535,320 - -1.3 535,349 + -1.0 535,390 - +0.3 535,390 - +0.8 535,390 - +0.3 535,457 + -0.1 535,462 - +0.1 535,653 - +0.4 535,718 + H281DRAFT_02374 0.13 +0.6 535,720 + H281DRAFT_02374 0.13 +0.4 535,721 - H281DRAFT_02374 0.13 +0.4 535,814 + H281DRAFT_02374 0.19 +0.3 535,814 + H281DRAFT_02374 0.19 +0.5 535,814 + H281DRAFT_02374 0.19 +1.7 535,815 - H281DRAFT_02374 0.19 +1.2 535,815 - H281DRAFT_02374 0.19 +0.7 535,815 - H281DRAFT_02374 0.19 +0.3 535,816 + H281DRAFT_02374 0.19 +0.1 535,816 + H281DRAFT_02374 0.19 -0.3 535,817 - H281DRAFT_02374 0.19 +0.2 535,838 + H281DRAFT_02374 0.20 +0.4 536,252 + H281DRAFT_02374 0.44 +0.1 536,336 - H281DRAFT_02374 0.49 +0.6 536,370 + H281DRAFT_02374 0.51 +0.4 536,433 - H281DRAFT_02374 0.55 -0.1 536,461 + H281DRAFT_02374 0.57 +1.2 536,620 - H281DRAFT_02374 0.66 +0.6 536,620 - H281DRAFT_02374 0.66 -0.3 536,768 + H281DRAFT_02374 0.74 -0.6 536,768 + H281DRAFT_02374 0.74 +1.3 536,769 - H281DRAFT_02374 0.74 +0.4 536,769 - H281DRAFT_02374 0.74 +0.3 536,772 + H281DRAFT_02374 0.75 -0.3 536,773 - H281DRAFT_02374 0.75 +0.5 536,773 - H281DRAFT_02374 0.75 -0.6 537,016 + H281DRAFT_02374 0.89 +0.5 537,062 - +0.6 537,080 - +0.1 537,080 - -1.3 537,255 + -1.0 537,451 + -0.7 537,464 + +0.3 537,762 - H281DRAFT_02375 0.36 -0.3 538,181 - H281DRAFT_02375 0.89 +0.1 538,181 - H281DRAFT_02375 0.89 +0.4 538,181 - H281DRAFT_02375 0.89 -0.2
Or see this region's nucleotide sequence