Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02356 and H281DRAFT_02357 are separated by 556 nucleotides H281DRAFT_02357 and H281DRAFT_02358 are separated by 241 nucleotides
H281DRAFT_02356: H281DRAFT_02356 - general secretion pathway protein D, at 513,527 to 515,878
_02356
H281DRAFT_02357: H281DRAFT_02357 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 516,435 to 516,842
_02357
H281DRAFT_02358: H281DRAFT_02358 - GTPase, G3E family, at 517,084 to 518,400
_02358
Position (kb) 516
517 Strain fitness (log2 ratio) -1
0
1
2
3 at 515.501 kb on + strand, within H281DRAFT_02356 at 515.502 kb on - strand, within H281DRAFT_02356 at 515.502 kb on - strand, within H281DRAFT_02356 at 515.502 kb on - strand, within H281DRAFT_02356 at 515.502 kb on - strand, within H281DRAFT_02356 at 515.550 kb on + strand, within H281DRAFT_02356 at 515.550 kb on + strand, within H281DRAFT_02356 at 515.597 kb on + strand, within H281DRAFT_02356 at 515.597 kb on + strand, within H281DRAFT_02356 at 515.598 kb on - strand, within H281DRAFT_02356 at 515.598 kb on - strand, within H281DRAFT_02356 at 515.600 kb on + strand at 515.615 kb on + strand, within H281DRAFT_02356 at 515.616 kb on - strand, within H281DRAFT_02356 at 515.616 kb on - strand, within H281DRAFT_02356 at 515.756 kb on + strand at 515.756 kb on + strand at 515.900 kb on + strand at 515.900 kb on + strand at 515.900 kb on + strand at 515.901 kb on - strand at 515.901 kb on - strand at 515.901 kb on - strand at 515.993 kb on - strand at 516.049 kb on - strand at 516.049 kb on - strand at 516.186 kb on + strand at 516.186 kb on + strand at 516.186 kb on + strand at 516.186 kb on + strand at 516.186 kb on + strand at 516.187 kb on - strand at 516.187 kb on - strand at 516.187 kb on - strand at 516.187 kb on - strand at 516.187 kb on - strand at 516.195 kb on + strand at 516.195 kb on + strand at 516.196 kb on - strand at 516.199 kb on + strand at 516.199 kb on + strand at 516.199 kb on + strand at 516.200 kb on - strand at 516.230 kb on + strand at 516.230 kb on + strand at 516.230 kb on + strand at 516.231 kb on - strand at 516.231 kb on - strand at 516.231 kb on - strand at 516.353 kb on + strand at 516.353 kb on + strand at 516.364 kb on - strand at 516.364 kb on - strand at 516.431 kb on + strand at 516.431 kb on + strand at 516.489 kb on + strand, within H281DRAFT_02357 at 516.489 kb on + strand, within H281DRAFT_02357 at 516.489 kb on + strand, within H281DRAFT_02357 at 516.490 kb on - strand, within H281DRAFT_02357 at 516.588 kb on + strand, within H281DRAFT_02357 at 516.637 kb on - strand, within H281DRAFT_02357 at 516.681 kb on + strand, within H281DRAFT_02357 at 516.681 kb on + strand, within H281DRAFT_02357 at 516.681 kb on + strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.682 kb on - strand, within H281DRAFT_02357 at 516.720 kb on + strand, within H281DRAFT_02357 at 516.721 kb on - strand, within H281DRAFT_02357 at 516.721 kb on - strand, within H281DRAFT_02357 at 516.721 kb on - strand, within H281DRAFT_02357 at 516.728 kb on + strand, within H281DRAFT_02357 at 516.728 kb on + strand, within H281DRAFT_02357 at 516.729 kb on - strand, within H281DRAFT_02357 at 516.729 kb on - strand, within H281DRAFT_02357 at 516.729 kb on - strand, within H281DRAFT_02357 at 516.729 kb on - strand, within H281DRAFT_02357 at 516.729 kb on - strand, within H281DRAFT_02357 at 516.750 kb on + strand, within H281DRAFT_02357 at 516.783 kb on + strand, within H281DRAFT_02357 at 516.783 kb on + strand, within H281DRAFT_02357 at 516.783 kb on + strand, within H281DRAFT_02357 at 516.783 kb on + strand, within H281DRAFT_02357 at 516.784 kb on - strand, within H281DRAFT_02357 at 516.880 kb on + strand at 516.880 kb on + strand at 516.881 kb on - strand at 516.881 kb on - strand at 517.078 kb on - strand at 517.221 kb on + strand, within H281DRAFT_02358 at 517.238 kb on + strand, within H281DRAFT_02358 at 517.476 kb on + strand, within H281DRAFT_02358 at 517.477 kb on - strand, within H281DRAFT_02358
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 515,501 + H281DRAFT_02356 0.84 +3.0 515,502 - H281DRAFT_02356 0.84 +0.3 515,502 - H281DRAFT_02356 0.84 +0.2 515,502 - H281DRAFT_02356 0.84 +0.5 515,502 - H281DRAFT_02356 0.84 +0.4 515,550 + H281DRAFT_02356 0.86 +0.4 515,550 + H281DRAFT_02356 0.86 +0.2 515,597 + H281DRAFT_02356 0.88 +0.5 515,597 + H281DRAFT_02356 0.88 -1.2 515,598 - H281DRAFT_02356 0.88 -0.0 515,598 - H281DRAFT_02356 0.88 +0.3 515,600 + +2.0 515,615 + H281DRAFT_02356 0.89 +0.4 515,616 - H281DRAFT_02356 0.89 +0.6 515,616 - H281DRAFT_02356 0.89 +0.8 515,756 + +0.3 515,756 + -0.6 515,900 + +2.3 515,900 + +2.6 515,900 + +0.9 515,901 - +0.2 515,901 - +0.2 515,901 - -0.5 515,993 - -1.3 516,049 - +0.6 516,049 - +0.2 516,186 + +0.5 516,186 + -0.2 516,186 + +0.3 516,186 + +0.4 516,186 + -0.7 516,187 - -0.7 516,187 - -0.5 516,187 - +0.2 516,187 - +0.1 516,187 - +0.2 516,195 + -0.0 516,195 + +0.4 516,196 - -0.0 516,199 + +0.2 516,199 + -0.7 516,199 + +1.0 516,200 - -0.4 516,230 + +0.3 516,230 + -0.2 516,230 + +0.7 516,231 - -0.4 516,231 - -0.1 516,231 - -0.5 516,353 + -0.3 516,353 + -0.3 516,364 - +0.1 516,364 - -0.1 516,431 + +0.1 516,431 + -0.0 516,489 + H281DRAFT_02357 0.13 -0.4 516,489 + H281DRAFT_02357 0.13 -0.1 516,489 + H281DRAFT_02357 0.13 -0.0 516,490 - H281DRAFT_02357 0.13 -0.9 516,588 + H281DRAFT_02357 0.38 -1.2 516,637 - H281DRAFT_02357 0.50 +0.7 516,681 + H281DRAFT_02357 0.60 +0.7 516,681 + H281DRAFT_02357 0.60 -0.1 516,681 + H281DRAFT_02357 0.60 -0.3 516,682 - H281DRAFT_02357 0.61 -0.7 516,682 - H281DRAFT_02357 0.61 +0.1 516,682 - H281DRAFT_02357 0.61 -0.0 516,682 - H281DRAFT_02357 0.61 -1.1 516,682 - H281DRAFT_02357 0.61 -0.2 516,682 - H281DRAFT_02357 0.61 +0.1 516,682 - H281DRAFT_02357 0.61 +0.1 516,720 + H281DRAFT_02357 0.70 -0.6 516,721 - H281DRAFT_02357 0.70 -0.6 516,721 - H281DRAFT_02357 0.70 -0.2 516,721 - H281DRAFT_02357 0.70 -0.4 516,728 + H281DRAFT_02357 0.72 +0.2 516,728 + H281DRAFT_02357 0.72 -1.1 516,729 - H281DRAFT_02357 0.72 -0.2 516,729 - H281DRAFT_02357 0.72 +0.1 516,729 - H281DRAFT_02357 0.72 -0.5 516,729 - H281DRAFT_02357 0.72 +0.2 516,729 - H281DRAFT_02357 0.72 -0.0 516,750 + H281DRAFT_02357 0.77 -0.1 516,783 + H281DRAFT_02357 0.85 -0.1 516,783 + H281DRAFT_02357 0.85 -0.1 516,783 + H281DRAFT_02357 0.85 -0.9 516,783 + H281DRAFT_02357 0.85 +0.3 516,784 - H281DRAFT_02357 0.86 -0.9 516,880 + +1.0 516,880 + +0.1 516,881 - -0.1 516,881 - -0.3 517,078 - -0.4 517,221 + H281DRAFT_02358 0.10 -0.2 517,238 + H281DRAFT_02358 0.12 +0.4 517,476 + H281DRAFT_02358 0.30 -0.2 517,477 - H281DRAFT_02358 0.30 +0.8
Or see this region's nucleotide sequence