Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02349

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02348 and H281DRAFT_02349 are separated by 1 nucleotidesH281DRAFT_02349 and H281DRAFT_02350 overlap by 23 nucleotidesH281DRAFT_02350 and H281DRAFT_02351 are separated by 1 nucleotidesH281DRAFT_02351 and H281DRAFT_02352 are separated by 98 nucleotides H281DRAFT_02348: H281DRAFT_02348 - general secretion pathway protein K, at 506,776 to 507,966 _02348 H281DRAFT_02349: H281DRAFT_02349 - general secretion pathway protein J, at 507,968 to 508,645 _02349 H281DRAFT_02350: H281DRAFT_02350 - general secretion pathway protein I, at 508,623 to 509,036 _02350 H281DRAFT_02351: H281DRAFT_02351 - general secretion pathway protein H, at 509,038 to 509,520 _02351 H281DRAFT_02352: H281DRAFT_02352 - general secretion pathway protein G, at 509,619 to 510,083 _02352 Position (kb) 507 508 509Strain fitness (log2 ratio) -1 0 1 2 3at 507.247 kb on - strand, within H281DRAFT_02348at 507.416 kb on + strand, within H281DRAFT_02348at 507.416 kb on + strand, within H281DRAFT_02348at 507.416 kb on + strand, within H281DRAFT_02348at 507.417 kb on - strand, within H281DRAFT_02348at 507.524 kb on + strand, within H281DRAFT_02348at 507.524 kb on + strand, within H281DRAFT_02348at 507.524 kb on + strand, within H281DRAFT_02348at 507.525 kb on - strand, within H281DRAFT_02348at 507.623 kb on + strand, within H281DRAFT_02348at 507.623 kb on + strand, within H281DRAFT_02348at 507.623 kb on + strand, within H281DRAFT_02348at 507.624 kb on - strand, within H281DRAFT_02348at 507.624 kb on - strand, within H281DRAFT_02348at 507.624 kb on - strand, within H281DRAFT_02348at 507.627 kb on + strand, within H281DRAFT_02348at 507.628 kb on - strand, within H281DRAFT_02348at 507.628 kb on - strand, within H281DRAFT_02348at 507.642 kb on + strand, within H281DRAFT_02348at 507.760 kb on + strand, within H281DRAFT_02348at 507.760 kb on + strand, within H281DRAFT_02348at 507.761 kb on - strand, within H281DRAFT_02348at 507.761 kb on - strand, within H281DRAFT_02348at 507.797 kb on - strand, within H281DRAFT_02348at 507.946 kb on - strandat 508.158 kb on + strand, within H281DRAFT_02349at 508.158 kb on + strand, within H281DRAFT_02349at 508.244 kb on + strand, within H281DRAFT_02349at 508.349 kb on + strand, within H281DRAFT_02349at 508.349 kb on + strand, within H281DRAFT_02349at 508.349 kb on + strand, within H281DRAFT_02349at 508.350 kb on - strand, within H281DRAFT_02349at 508.823 kb on + strandat 508.823 kb on + strand, within H281DRAFT_02350at 508.823 kb on + strand, within H281DRAFT_02350at 508.823 kb on + strandat 508.824 kb on - strand, within H281DRAFT_02350at 508.824 kb on - strand, within H281DRAFT_02350at 508.824 kb on - strand, within H281DRAFT_02350at 508.911 kb on + strand, within H281DRAFT_02350at 509.143 kb on + strand, within H281DRAFT_02351at 509.144 kb on - strand, within H281DRAFT_02351at 509.144 kb on - strand, within H281DRAFT_02351at 509.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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507,247 - H281DRAFT_02348 0.40 +0.5
507,416 + H281DRAFT_02348 0.54 +0.3
507,416 + H281DRAFT_02348 0.54 +1.6
507,416 + H281DRAFT_02348 0.54 +0.7
507,417 - H281DRAFT_02348 0.54 +0.3
507,524 + H281DRAFT_02348 0.63 +1.0
507,524 + H281DRAFT_02348 0.63 +0.5
507,524 + H281DRAFT_02348 0.63 +0.1
507,525 - H281DRAFT_02348 0.63 +0.8
507,623 + H281DRAFT_02348 0.71 +0.6
507,623 + H281DRAFT_02348 0.71 -0.8
507,623 + H281DRAFT_02348 0.71 +0.3
507,624 - H281DRAFT_02348 0.71 +0.5
507,624 - H281DRAFT_02348 0.71 +0.7
507,624 - H281DRAFT_02348 0.71 -0.0
507,627 + H281DRAFT_02348 0.71 +0.4
507,628 - H281DRAFT_02348 0.72 +0.2
507,628 - H281DRAFT_02348 0.72 -0.1
507,642 + H281DRAFT_02348 0.73 +0.0
507,760 + H281DRAFT_02348 0.83 +1.0
507,760 + H281DRAFT_02348 0.83 +0.6
507,761 - H281DRAFT_02348 0.83 +0.9
507,761 - H281DRAFT_02348 0.83 +0.1
507,797 - H281DRAFT_02348 0.86 +0.7
507,946 - -0.1
508,158 + H281DRAFT_02349 0.28 -0.2
508,158 + H281DRAFT_02349 0.28 -0.2
508,244 + H281DRAFT_02349 0.41 +0.7
508,349 + H281DRAFT_02349 0.56 -0.7
508,349 + H281DRAFT_02349 0.56 +0.6
508,349 + H281DRAFT_02349 0.56 -0.0
508,350 - H281DRAFT_02349 0.56 +0.4
508,823 + +1.6
508,823 + H281DRAFT_02350 0.48 +0.6
508,823 + H281DRAFT_02350 0.48 -0.0
508,823 + +3.5
508,824 - H281DRAFT_02350 0.49 +0.2
508,824 - H281DRAFT_02350 0.49 -0.1
508,824 - H281DRAFT_02350 0.49 +0.8
508,911 + H281DRAFT_02350 0.70 +0.5
509,143 + H281DRAFT_02351 0.22 +0.3
509,144 - H281DRAFT_02351 0.22 +0.3
509,144 - H281DRAFT_02351 0.22 +0.2
509,620 + -0.1

Or see this region's nucleotide sequence