Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02310

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02308 and H281DRAFT_02309 are separated by 21 nucleotidesH281DRAFT_02309 and H281DRAFT_02310 are separated by 111 nucleotidesH281DRAFT_02310 and H281DRAFT_02311 are separated by 28 nucleotides H281DRAFT_02308: H281DRAFT_02308 - hypothetical protein, at 458,573 to 459,880 _02308 H281DRAFT_02309: H281DRAFT_02309 - Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion, at 459,902 to 460,189 _02309 H281DRAFT_02310: H281DRAFT_02310 - hypothetical protein, at 460,301 to 461,080 _02310 H281DRAFT_02311: H281DRAFT_02311 - hypothetical protein, at 461,109 to 462,521 _02311 Position (kb) 460 461 462Strain fitness (log2 ratio) -1 0 1at 459.314 kb on + strand, within H281DRAFT_02308at 459.314 kb on + strand, within H281DRAFT_02308at 459.317 kb on + strand, within H281DRAFT_02308at 459.317 kb on + strand, within H281DRAFT_02308at 459.317 kb on + strand, within H281DRAFT_02308at 459.317 kb on + strand, within H281DRAFT_02308at 459.318 kb on - strand, within H281DRAFT_02308at 459.346 kb on + strand, within H281DRAFT_02308at 459.347 kb on - strand, within H281DRAFT_02308at 459.356 kb on + strand, within H281DRAFT_02308at 459.693 kb on + strand, within H281DRAFT_02308at 459.693 kb on + strand, within H281DRAFT_02308at 459.693 kb on + strand, within H281DRAFT_02308at 459.694 kb on - strand, within H281DRAFT_02308at 459.694 kb on - strand, within H281DRAFT_02308at 459.694 kb on - strand, within H281DRAFT_02308at 459.777 kb on + strandat 459.777 kb on + strandat 459.778 kb on - strandat 459.778 kb on - strandat 459.778 kb on - strandat 459.863 kb on + strandat 459.878 kb on + strandat 459.878 kb on + strandat 459.879 kb on - strandat 459.879 kb on - strandat 460.177 kb on + strandat 460.177 kb on + strandat 460.177 kb on + strandat 460.177 kb on + strandat 460.178 kb on - strandat 460.178 kb on - strandat 460.193 kb on + strandat 460.193 kb on + strandat 460.193 kb on + strandat 460.194 kb on - strandat 460.194 kb on - strandat 460.194 kb on - strandat 460.195 kb on + strandat 460.195 kb on + strandat 460.195 kb on + strandat 460.195 kb on + strandat 460.196 kb on - strandat 460.284 kb on + strandat 460.284 kb on + strandat 460.284 kb on + strandat 460.284 kb on + strandat 460.284 kb on + strandat 460.284 kb on + strandat 460.284 kb on + strandat 460.285 kb on - strandat 460.285 kb on - strandat 460.302 kb on + strandat 461.119 kb on + strandat 461.119 kb on + strandat 461.119 kb on + strandat 461.119 kb on + strandat 461.119 kb on + strandat 461.120 kb on - strandat 461.120 kb on - strandat 461.120 kb on - strandat 461.120 kb on - strandat 461.120 kb on - strandat 461.120 kb on - strandat 461.120 kb on - strandat 461.140 kb on + strandat 461.140 kb on + strandat 461.140 kb on + strandat 461.140 kb on + strandat 461.141 kb on - strandat 461.167 kb on + strandat 461.295 kb on + strand, within H281DRAFT_02311at 461.295 kb on + strand, within H281DRAFT_02311at 461.295 kb on + strand, within H281DRAFT_02311at 461.296 kb on - strand, within H281DRAFT_02311at 461.296 kb on - strand, within H281DRAFT_02311at 461.296 kb on - strand, within H281DRAFT_02311at 461.298 kb on + strand, within H281DRAFT_02311at 461.363 kb on + strand, within H281DRAFT_02311at 461.363 kb on + strand, within H281DRAFT_02311at 461.363 kb on + strand, within H281DRAFT_02311at 461.364 kb on - strand, within H281DRAFT_02311at 461.364 kb on - strand, within H281DRAFT_02311at 461.364 kb on - strand, within H281DRAFT_02311at 461.470 kb on + strand, within H281DRAFT_02311at 461.471 kb on - strand, within H281DRAFT_02311at 461.493 kb on - strand, within H281DRAFT_02311at 461.657 kb on + strand, within H281DRAFT_02311at 461.657 kb on + strand, within H281DRAFT_02311at 461.657 kb on + strand, within H281DRAFT_02311at 461.689 kb on + strand, within H281DRAFT_02311at 461.689 kb on + strand, within H281DRAFT_02311at 461.689 kb on + strand, within H281DRAFT_02311at 461.689 kb on + strand, within H281DRAFT_02311at 461.689 kb on + strand, within H281DRAFT_02311at 461.689 kb on + strand, within H281DRAFT_02311at 461.690 kb on - strand, within H281DRAFT_02311at 461.690 kb on - strand, within H281DRAFT_02311at 461.690 kb on - strand, within H281DRAFT_02311at 461.728 kb on - strandat 461.728 kb on - strand, within H281DRAFT_02311at 461.728 kb on - strand, within H281DRAFT_02311at 461.808 kb on + strand, within H281DRAFT_02311at 461.808 kb on + strand, within H281DRAFT_02311at 461.808 kb on + strand, within H281DRAFT_02311at 461.809 kb on - strand, within H281DRAFT_02311at 461.812 kb on - strand, within H281DRAFT_02311at 461.837 kb on + strand, within H281DRAFT_02311at 461.837 kb on + strand, within H281DRAFT_02311at 461.837 kb on + strand, within H281DRAFT_02311at 461.838 kb on - strand, within H281DRAFT_02311at 461.838 kb on - strand, within H281DRAFT_02311at 461.838 kb on - strand, within H281DRAFT_02311at 461.838 kb on - strand, within H281DRAFT_02311at 461.844 kb on + strand, within H281DRAFT_02311at 461.844 kb on + strand, within H281DRAFT_02311at 461.845 kb on - strand, within H281DRAFT_02311at 461.845 kb on - strand, within H281DRAFT_02311at 461.845 kb on - strand, within H281DRAFT_02311at 461.852 kb on + strand, within H281DRAFT_02311at 461.852 kb on + strand, within H281DRAFT_02311at 461.852 kb on + strand, within H281DRAFT_02311at 462.037 kb on + strand, within H281DRAFT_02311at 462.037 kb on + strand, within H281DRAFT_02311at 462.038 kb on - strand, within H281DRAFT_02311at 462.038 kb on - strand, within H281DRAFT_02311at 462.061 kb on + strand, within H281DRAFT_02311at 462.061 kb on + strand, within H281DRAFT_02311at 462.062 kb on - strandat 462.062 kb on - strand, within H281DRAFT_02311at 462.062 kb on - strand, within H281DRAFT_02311

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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459,314 + H281DRAFT_02308 0.57 +0.3
459,314 + H281DRAFT_02308 0.57 -0.4
459,317 + H281DRAFT_02308 0.57 +0.2
459,317 + H281DRAFT_02308 0.57 -0.4
459,317 + H281DRAFT_02308 0.57 +0.2
459,317 + H281DRAFT_02308 0.57 +0.0
459,318 - H281DRAFT_02308 0.57 -0.3
459,346 + H281DRAFT_02308 0.59 +0.2
459,347 - H281DRAFT_02308 0.59 -0.0
459,356 + H281DRAFT_02308 0.60 +0.4
459,693 + H281DRAFT_02308 0.86 -1.1
459,693 + H281DRAFT_02308 0.86 -0.0
459,693 + H281DRAFT_02308 0.86 -0.4
459,694 - H281DRAFT_02308 0.86 +0.6
459,694 - H281DRAFT_02308 0.86 +0.8
459,694 - H281DRAFT_02308 0.86 +0.6
459,777 + -0.3
459,777 + -0.1
459,778 - +0.3
459,778 - +0.8
459,778 - +0.4
459,863 + +0.3
459,878 + -0.0
459,878 + +0.2
459,879 - +0.4
459,879 - -0.5
460,177 + +0.5
460,177 + -0.2
460,177 + +0.0
460,177 + +0.3
460,178 - -1.1
460,178 - -0.9
460,193 + -0.1
460,193 + -0.4
460,193 + -0.6
460,194 - -0.4
460,194 - -0.1
460,194 - -0.1
460,195 + -0.2
460,195 + -0.5
460,195 + +0.5
460,195 + -0.4
460,196 - +0.2
460,284 + +1.7
460,284 + +0.2
460,284 + -0.1
460,284 + -1.2
460,284 + -0.5
460,284 + +0.1
460,284 + -0.4
460,285 - +0.2
460,285 - -0.3
460,302 + +1.1
461,119 + -0.7
461,119 + +0.4
461,119 + -0.6
461,119 + +1.0
461,119 + -0.4
461,120 - +0.6
461,120 - +0.2
461,120 - +0.0
461,120 - +0.8
461,120 - +0.8
461,120 - +0.3
461,120 - +0.3
461,140 + +0.2
461,140 + +0.1
461,140 + +0.2
461,140 + -0.1
461,141 - +0.4
461,167 + +0.1
461,295 + H281DRAFT_02311 0.13 +0.5
461,295 + H281DRAFT_02311 0.13 +0.6
461,295 + H281DRAFT_02311 0.13 +0.6
461,296 - H281DRAFT_02311 0.13 +0.5
461,296 - H281DRAFT_02311 0.13 -0.2
461,296 - H281DRAFT_02311 0.13 +0.4
461,298 + H281DRAFT_02311 0.13 +0.5
461,363 + H281DRAFT_02311 0.18 -0.0
461,363 + H281DRAFT_02311 0.18 +0.2
461,363 + H281DRAFT_02311 0.18 -0.1
461,364 - H281DRAFT_02311 0.18 +0.3
461,364 - H281DRAFT_02311 0.18 +0.1
461,364 - H281DRAFT_02311 0.18 +0.0
461,470 + H281DRAFT_02311 0.26 -0.2
461,471 - H281DRAFT_02311 0.26 +0.0
461,493 - H281DRAFT_02311 0.27 +1.0
461,657 + H281DRAFT_02311 0.39 -0.0
461,657 + H281DRAFT_02311 0.39 +0.0
461,657 + H281DRAFT_02311 0.39 +0.4
461,689 + H281DRAFT_02311 0.41 +0.3
461,689 + H281DRAFT_02311 0.41 +0.5
461,689 + H281DRAFT_02311 0.41 -0.0
461,689 + H281DRAFT_02311 0.41 +0.1
461,689 + H281DRAFT_02311 0.41 -0.1
461,689 + H281DRAFT_02311 0.41 +0.2
461,690 - H281DRAFT_02311 0.41 +0.3
461,690 - H281DRAFT_02311 0.41 +0.1
461,690 - H281DRAFT_02311 0.41 -0.4
461,728 - -0.0
461,728 - H281DRAFT_02311 0.44 +0.2
461,728 - H281DRAFT_02311 0.44 +0.0
461,808 + H281DRAFT_02311 0.49 +0.3
461,808 + H281DRAFT_02311 0.49 -0.1
461,808 + H281DRAFT_02311 0.49 -0.0
461,809 - H281DRAFT_02311 0.50 -0.3
461,812 - H281DRAFT_02311 0.50 +0.2
461,837 + H281DRAFT_02311 0.52 -0.2
461,837 + H281DRAFT_02311 0.52 +0.3
461,837 + H281DRAFT_02311 0.52 -0.0
461,838 - H281DRAFT_02311 0.52 -0.3
461,838 - H281DRAFT_02311 0.52 -0.1
461,838 - H281DRAFT_02311 0.52 -0.1
461,838 - H281DRAFT_02311 0.52 +0.2
461,844 + H281DRAFT_02311 0.52 +0.5
461,844 + H281DRAFT_02311 0.52 +0.4
461,845 - H281DRAFT_02311 0.52 +0.3
461,845 - H281DRAFT_02311 0.52 +0.6
461,845 - H281DRAFT_02311 0.52 -0.2
461,852 + H281DRAFT_02311 0.53 -0.4
461,852 + H281DRAFT_02311 0.53 -0.4
461,852 + H281DRAFT_02311 0.53 +0.3
462,037 + H281DRAFT_02311 0.66 +0.2
462,037 + H281DRAFT_02311 0.66 -0.1
462,038 - H281DRAFT_02311 0.66 +0.5
462,038 - H281DRAFT_02311 0.66 +0.2
462,061 + H281DRAFT_02311 0.67 +1.3
462,061 + H281DRAFT_02311 0.67 +0.1
462,062 - +1.3
462,062 - H281DRAFT_02311 0.67 -0.5
462,062 - H281DRAFT_02311 0.67 +0.4

Or see this region's nucleotide sequence