Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02235 and H281DRAFT_02236 overlap by 11 nucleotides H281DRAFT_02236 and H281DRAFT_02237 overlap by 4 nucleotides H281DRAFT_02237 and H281DRAFT_02238 are separated by 168 nucleotides
H281DRAFT_02235: H281DRAFT_02235 - multi-sensor signal transduction histidine kinase, at 378,601 to 381,015
_02235
H281DRAFT_02236: H281DRAFT_02236 - protein of unknown function (DUF4390), at 381,005 to 381,604
_02236
H281DRAFT_02237: H281DRAFT_02237 - 16S rRNA (cytosine967-C5)-methyltransferase, at 381,601 to 383,040
_02237
H281DRAFT_02238: H281DRAFT_02238 - Heat shock protein. Metallo peptidase. MEROPS family M48B, at 383,209 to 384,066
_02238
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 380.699 kb on + strand, within H281DRAFT_02235 at 380.873 kb on + strand at 380.873 kb on + strand at 381.007 kb on - strand at 381.010 kb on + strand at 381.010 kb on + strand at 381.011 kb on - strand at 381.029 kb on - strand at 381.144 kb on + strand, within H281DRAFT_02236 at 381.403 kb on + strand, within H281DRAFT_02236 at 381.727 kb on + strand at 381.728 kb on - strand at 381.728 kb on - strand at 381.825 kb on + strand, within H281DRAFT_02237 at 381.826 kb on - strand, within H281DRAFT_02237 at 381.826 kb on - strand, within H281DRAFT_02237 at 381.830 kb on + strand, within H281DRAFT_02237 at 381.831 kb on - strand, within H281DRAFT_02237 at 382.050 kb on + strand, within H281DRAFT_02237 at 382.051 kb on - strand, within H281DRAFT_02237 at 382.380 kb on - strand, within H281DRAFT_02237 at 382.380 kb on - strand, within H281DRAFT_02237 at 382.380 kb on - strand, within H281DRAFT_02237 at 382.670 kb on + strand, within H281DRAFT_02237 at 383.032 kb on + strand at 383.033 kb on - strand at 383.093 kb on + strand at 383.093 kb on + strand at 383.093 kb on + strand at 383.093 kb on + strand at 383.094 kb on - strand at 383.094 kb on - strand at 383.094 kb on - strand at 383.159 kb on - strand at 383.583 kb on + strand, within H281DRAFT_02238 at 383.584 kb on - strand, within H281DRAFT_02238 at 383.801 kb on + strand, within H281DRAFT_02238 at 383.801 kb on + strand, within H281DRAFT_02238 at 383.856 kb on - strand, within H281DRAFT_02238 at 383.897 kb on + strand, within H281DRAFT_02238 at 383.898 kb on - strand, within H281DRAFT_02238
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 380,699 + H281DRAFT_02235 0.87 -1.0 380,873 + +0.0 380,873 + +0.7 381,007 - -0.1 381,010 + +0.7 381,010 + -0.6 381,011 - +0.1 381,029 - +0.7 381,144 + H281DRAFT_02236 0.23 -1.0 381,403 + H281DRAFT_02236 0.66 -1.0 381,727 + -0.5 381,728 - -0.3 381,728 - -1.0 381,825 + H281DRAFT_02237 0.16 -0.4 381,826 - H281DRAFT_02237 0.16 +0.6 381,826 - H281DRAFT_02237 0.16 -0.5 381,830 + H281DRAFT_02237 0.16 +0.0 381,831 - H281DRAFT_02237 0.16 -1.1 382,050 + H281DRAFT_02237 0.31 +0.4 382,051 - H281DRAFT_02237 0.31 -0.9 382,380 - H281DRAFT_02237 0.54 +0.3 382,380 - H281DRAFT_02237 0.54 -0.7 382,380 - H281DRAFT_02237 0.54 -0.4 382,670 + H281DRAFT_02237 0.74 -0.5 383,032 + -0.3 383,033 - -0.9 383,093 + -0.5 383,093 + -1.6 383,093 + -1.0 383,093 + -0.5 383,094 - -2.7 383,094 - -2.9 383,094 - -1.5 383,159 - -0.6 383,583 + H281DRAFT_02238 0.44 -0.4 383,584 - H281DRAFT_02238 0.44 -0.2 383,801 + H281DRAFT_02238 0.69 -0.5 383,801 + H281DRAFT_02238 0.69 -0.4 383,856 - H281DRAFT_02238 0.75 -0.6 383,897 + H281DRAFT_02238 0.80 +0.5 383,898 - H281DRAFT_02238 0.80 +0.2
Or see this region's nucleotide sequence