Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01624 and H281DRAFT_01625 are separated by 211 nucleotides H281DRAFT_01625 and H281DRAFT_01626 are separated by 29 nucleotides H281DRAFT_01626 and H281DRAFT_01627 overlap by 1 nucleotides H281DRAFT_01627 and H281DRAFT_01628 overlap by 4 nucleotides
H281DRAFT_01624: H281DRAFT_01624 - Protein of unknown function (DUF3005), at 503,955 to 504,407
_01624
H281DRAFT_01625: H281DRAFT_01625 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 504,619 to 505,224
_01625
H281DRAFT_01626: H281DRAFT_01626 - putative spermidine/putrescine transport system permease protein, at 505,254 to 506,180
_01626
H281DRAFT_01627: H281DRAFT_01627 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 506,180 to 507,067
_01627
H281DRAFT_01628: H281DRAFT_01628 - putative spermidine/putrescine transport system ATP-binding protein, at 507,064 to 508,143
_01628
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.307 kb on - strand, within H281DRAFT_01624 at 504.352 kb on - strand, within H281DRAFT_01624 at 504.375 kb on - strand at 504.405 kb on + strand at 504.670 kb on - strand at 505.121 kb on - strand, within H281DRAFT_01625 at 505.168 kb on + strand at 505.345 kb on + strand at 505.346 kb on - strand at 505.346 kb on - strand at 505.346 kb on - strand at 505.346 kb on - strand at 505.405 kb on + strand, within H281DRAFT_01626 at 505.408 kb on + strand, within H281DRAFT_01626 at 505.408 kb on + strand, within H281DRAFT_01626 at 505.541 kb on - strand, within H281DRAFT_01626 at 505.732 kb on + strand, within H281DRAFT_01626 at 505.925 kb on - strand, within H281DRAFT_01626 at 506.091 kb on + strand at 506.092 kb on - strand at 506.232 kb on - strand at 506.246 kb on + strand at 506.247 kb on - strand at 506.252 kb on + strand at 506.305 kb on - strand, within H281DRAFT_01627 at 506.458 kb on - strand, within H281DRAFT_01627 at 506.458 kb on - strand, within H281DRAFT_01627 at 506.539 kb on - strand, within H281DRAFT_01627 at 506.608 kb on + strand, within H281DRAFT_01627 at 506.609 kb on - strand, within H281DRAFT_01627 at 506.609 kb on - strand at 506.609 kb on - strand, within H281DRAFT_01627 at 506.609 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.686 kb on - strand, within H281DRAFT_01627 at 506.896 kb on - strand, within H281DRAFT_01627 at 506.961 kb on + strand, within H281DRAFT_01627 at 507.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 504,307 - H281DRAFT_01624 0.78 -1.4 504,352 - H281DRAFT_01624 0.88 -0.4 504,375 - -0.4 504,405 + +0.7 504,670 - -0.1 505,121 - H281DRAFT_01625 0.83 +0.1 505,168 + +0.5 505,345 + -0.5 505,346 - +0.0 505,346 - +1.8 505,346 - -0.6 505,346 - -0.1 505,405 + H281DRAFT_01626 0.16 -0.3 505,408 + H281DRAFT_01626 0.17 -2.4 505,408 + H281DRAFT_01626 0.17 -0.4 505,541 - H281DRAFT_01626 0.31 +0.8 505,732 + H281DRAFT_01626 0.52 -0.3 505,925 - H281DRAFT_01626 0.72 +0.0 506,091 + +0.2 506,092 - -0.6 506,232 - +0.3 506,246 + -0.2 506,247 - -0.4 506,252 + +0.4 506,305 - H281DRAFT_01627 0.14 +1.6 506,458 - H281DRAFT_01627 0.31 -0.5 506,458 - H281DRAFT_01627 0.31 -0.0 506,539 - H281DRAFT_01627 0.40 -1.0 506,608 + H281DRAFT_01627 0.48 +0.1 506,609 - H281DRAFT_01627 0.48 +0.6 506,609 - -0.6 506,609 - H281DRAFT_01627 0.48 +0.9 506,609 - H281DRAFT_01627 0.48 -0.4 506,686 - H281DRAFT_01627 0.57 +1.6 506,686 - H281DRAFT_01627 0.57 -0.4 506,686 - H281DRAFT_01627 0.57 -0.0 506,686 - H281DRAFT_01627 0.57 -0.1 506,686 - H281DRAFT_01627 0.57 -0.5 506,896 - H281DRAFT_01627 0.81 -0.1 506,961 + H281DRAFT_01627 0.88 -0.1 507,120 + -0.0
Or see this region's nucleotide sequence