Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01343 and H281DRAFT_01344 are separated by 72 nucleotides H281DRAFT_01344 and H281DRAFT_01345 are separated by 28 nucleotides
H281DRAFT_01343: H281DRAFT_01343 - 3-methylcrotonoyl-CoA carboxylase, alpha subunit, at 183,959 to 185,992
_01343
H281DRAFT_01344: H281DRAFT_01344 - methylglutaconyl-CoA hydratase, at 186,065 to 186,850
_01344
H281DRAFT_01345: H281DRAFT_01345 - 3-methylcrotonyl-CoA carboxylase beta subunit, at 186,879 to 188,486
_01345
Position (kb) 186
187 Strain fitness (log2 ratio) -1
0
1 at 185.389 kb on - strand, within H281DRAFT_01343 at 186.843 kb on + strand at 186.905 kb on + strand at 186.906 kb on - strand at 187.010 kb on - strand at 187.012 kb on + strand at 187.033 kb on + strand at 187.034 kb on - strand at 187.222 kb on + strand, within H281DRAFT_01345 at 187.374 kb on + strand, within H281DRAFT_01345 at 187.487 kb on + strand, within H281DRAFT_01345 at 187.487 kb on + strand, within H281DRAFT_01345 at 187.619 kb on - strand, within H281DRAFT_01345 at 187.637 kb on - strand, within H281DRAFT_01345 at 187.772 kb on + strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345 at 187.773 kb on - strand, within H281DRAFT_01345
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 185,389 - H281DRAFT_01343 0.70 +0.0 186,843 + -0.6 186,905 + +0.0 186,906 - -0.1 187,010 - -1.2 187,012 + -0.9 187,033 + -0.8 187,034 - +0.3 187,222 + H281DRAFT_01345 0.21 -1.0 187,374 + H281DRAFT_01345 0.31 -0.1 187,487 + H281DRAFT_01345 0.38 -0.5 187,487 + H281DRAFT_01345 0.38 -0.7 187,619 - H281DRAFT_01345 0.46 -0.7 187,637 - H281DRAFT_01345 0.47 -0.6 187,772 + H281DRAFT_01345 0.56 -0.2 187,773 - H281DRAFT_01345 0.56 -0.0 187,773 - H281DRAFT_01345 0.56 -0.5 187,773 - H281DRAFT_01345 0.56 -1.1 187,773 - H281DRAFT_01345 0.56 -0.6
Or see this region's nucleotide sequence