Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01080

Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01080 and H281DRAFT_01081 are separated by 60 nucleotides H281DRAFT_01080: H281DRAFT_01080 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 1,212,861 to 1,213,631 _01080 H281DRAFT_01081: H281DRAFT_01081 - L-glutamine synthetase, at 1,213,692 to 1,215,026 _01081 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -1 0 1at 1212.136 kb on + strandat 1212.148 kb on + strandat 1212.288 kb on + strandat 1212.479 kb on + strandat 1212.479 kb on + strandat 1212.479 kb on + strandat 1214.101 kb on - strand, within H281DRAFT_01081at 1214.593 kb on - strand, within H281DRAFT_01081

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
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1,212,136 + -0.3
1,212,148 + -0.6
1,212,288 + -0.3
1,212,479 + -0.4
1,212,479 + -0.6
1,212,479 + +1.0
1,214,101 - H281DRAFT_01081 0.31 -0.8
1,214,593 - H281DRAFT_01081 0.67 -0.2

Or see this region's nucleotide sequence