Experiment: Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00799 and H281DRAFT_00800 are separated by 355 nucleotides H281DRAFT_00800 and H281DRAFT_00801 are separated by 184 nucleotides
H281DRAFT_00799: H281DRAFT_00799 - PhoH-like ATPase, at 885,675 to 887,537
_00799
H281DRAFT_00800: H281DRAFT_00800 - peroxiredoxin Q/BCP, at 887,893 to 888,354
_00800
H281DRAFT_00801: H281DRAFT_00801 - Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family, at 888,539 to 889,432
_00801
Position (kb) 887
888
889 Strain fitness (log2 ratio) -1
0
1
2 at 886.946 kb on + strand, within H281DRAFT_00799 at 886.946 kb on + strand, within H281DRAFT_00799 at 886.946 kb on + strand, within H281DRAFT_00799 at 886.947 kb on - strand, within H281DRAFT_00799 at 886.947 kb on - strand, within H281DRAFT_00799 at 886.984 kb on + strand, within H281DRAFT_00799 at 886.984 kb on + strand, within H281DRAFT_00799 at 886.984 kb on + strand, within H281DRAFT_00799 at 886.985 kb on - strand, within H281DRAFT_00799 at 887.405 kb on - strand at 887.482 kb on + strand at 887.482 kb on + strand at 887.482 kb on + strand at 887.483 kb on - strand at 887.553 kb on - strand at 887.566 kb on - strand at 887.643 kb on - strand at 887.745 kb on - strand at 887.745 kb on - strand at 887.884 kb on + strand at 887.884 kb on + strand at 887.885 kb on - strand at 887.906 kb on - strand at 888.013 kb on + strand, within H281DRAFT_00800 at 888.013 kb on + strand, within H281DRAFT_00800 at 888.027 kb on - strand, within H281DRAFT_00800 at 888.254 kb on + strand, within H281DRAFT_00800 at 888.254 kb on + strand, within H281DRAFT_00800 at 888.255 kb on - strand, within H281DRAFT_00800 at 888.255 kb on - strand, within H281DRAFT_00800 at 888.371 kb on + strand at 888.371 kb on + strand at 888.371 kb on + strand at 888.372 kb on - strand at 888.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days remove 886,946 + H281DRAFT_00799 0.68 -0.5 886,946 + H281DRAFT_00799 0.68 +0.5 886,946 + H281DRAFT_00799 0.68 +0.2 886,947 - H281DRAFT_00799 0.68 -0.2 886,947 - H281DRAFT_00799 0.68 +0.2 886,984 + H281DRAFT_00799 0.70 -0.3 886,984 + H281DRAFT_00799 0.70 -0.4 886,984 + H281DRAFT_00799 0.70 +0.8 886,985 - H281DRAFT_00799 0.70 +1.6 887,405 - +0.2 887,482 + +0.6 887,482 + -0.2 887,482 + +0.6 887,483 - +0.1 887,553 - +0.2 887,566 - +0.3 887,643 - +0.5 887,745 - -0.3 887,745 - -0.4 887,884 + +0.4 887,884 + +0.7 887,885 - +0.9 887,906 - +0.2 888,013 + H281DRAFT_00800 0.26 -0.6 888,013 + H281DRAFT_00800 0.26 -0.1 888,027 - H281DRAFT_00800 0.29 -0.7 888,254 + H281DRAFT_00800 0.78 -1.0 888,254 + H281DRAFT_00800 0.78 -0.5 888,255 - H281DRAFT_00800 0.78 +0.5 888,255 - H281DRAFT_00800 0.78 +0.1 888,371 + -0.9 888,371 + +2.0 888,371 + -0.4 888,372 - +0.4 888,374 - +0.1
Or see this region's nucleotide sequence